Gene : Phvul.004G013800 P. vulgaris v2.1
Defline:  (1 of 1) 1.4.3.16 - L-aspartate oxidase / LASPO Genomic Order:  158
Name:  ? Phvul.004G013800 Secondary Identifier:  ? PAC:37162388
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PYRIDNUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G013800 0.5kb upstream 0.5kb upstream 5979 true Chr04: 1559522-1565500 Phaseolus vulgaris
Phvul.004G013800 0.5kb upstream 0.5kb upstream 500 false Chr04: 1559522-1560021 Phaseolus vulgaris
Phvul.004G013800 0.5kb downstream 0.5kb downstream 5979 true Chr04: 1560022-1566000 Phaseolus vulgaris
Phvul.004G013800 0.5kb downstream 0.5kb downstream 500 false Chr04: 1565501-1566000 Phaseolus vulgaris
Phvul.004G013800 1.0kb upstream 1.0kb upstream 6479 true Chr04: 1559022-1565500 Phaseolus vulgaris
Phvul.004G013800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 1559022-1560021 Phaseolus vulgaris
Phvul.004G013800 1.0kb downstream 1.0kb downstream 6479 true Chr04: 1560022-1566500 Phaseolus vulgaris
Phvul.004G013800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 1565501-1566500 Phaseolus vulgaris
Phvul.004G013800 2.0kb upstream 2.0kb upstream 7479 true Chr04: 1558022-1565500 Phaseolus vulgaris
Phvul.004G013800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 1558022-1560021 Phaseolus vulgaris
Phvul.004G013800 2.0kb downstream 2.0kb downstream 7479 true Chr04: 1560022-1567500 Phaseolus vulgaris
Phvul.004G013800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 1565501-1567500 Phaseolus vulgaris
Phvul.004G013800 5.0kb upstream 5.0kb upstream 10479 true Chr04: 1555022-1565500 Phaseolus vulgaris
Phvul.004G013800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 1555022-1560021 Phaseolus vulgaris
Phvul.004G013800 5.0kb downstream 5.0kb downstream 10479 true Chr04: 1560022-1570500 Phaseolus vulgaris
Phvul.004G013800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 1565501-1570500 Phaseolus vulgaris
Phvul.004G013800 10.0kb upstream 10.0kb upstream 15479 true Chr04: 1550022-1565500 Phaseolus vulgaris
Phvul.004G013800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 1550022-1560021 Phaseolus vulgaris
Phvul.004G013800 10.0kb downstream 10.0kb downstream 15479 true Chr04: 1560022-1575500 Phaseolus vulgaris
Phvul.004G013800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 1565501-1575500 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303929 5265 Fabidae View MSA
124067870 5270 Rosid View MSA
123737542 5271 Pentapetalae View MSA
122792941 5272 Eudicot View MSA
122044025 5273 Angiosperm View MSA
121345783 5274 Embryophyte View MSA
123424759 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.75838 0.0 9.97402    
cufflinks 1.04611 0.0 5.01799    
cufflinks 6.282 0.0 22.2611   High
cufflinks 6.61265 0.0 20.6068   High
cufflinks 3.97102 0.0 13.489    
cufflinks 0.686886 0.0 2.83444    
cufflinks 0.422697 0.0 1.85087 Low Low
cufflinks 0.512987 0.0 2.22812   Low
cufflinks 0.423054 0.0 2.52916 Low Low
cufflinks 1.84119 0.0 5.9481    
cufflinks 1.62045 0.0 7.0108    

0 Strain