Gene : Phvul.004G017500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24326:SF136 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54-RELATED Genomic Order:  212
Name:  ? Phvul.004G017500 Secondary Identifier:  ? PAC:37161660
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G017500 0.5kb upstream 0.5kb upstream 3436 true Chr04: 2103762-2107197 Phaseolus vulgaris
Phvul.004G017500 0.5kb upstream 0.5kb upstream 500 false Chr04: 2103762-2104261 Phaseolus vulgaris
Phvul.004G017500 0.5kb downstream 0.5kb downstream 3436 true Chr04: 2104262-2107697 Phaseolus vulgaris
Phvul.004G017500 0.5kb downstream 0.5kb downstream 500 false Chr04: 2107198-2107697 Phaseolus vulgaris
Phvul.004G017500 1.0kb upstream 1.0kb upstream 3936 true Chr04: 2103262-2107197 Phaseolus vulgaris
Phvul.004G017500 1.0kb upstream 1.0kb upstream 1000 false Chr04: 2103262-2104261 Phaseolus vulgaris
Phvul.004G017500 1.0kb downstream 1.0kb downstream 3936 true Chr04: 2104262-2108197 Phaseolus vulgaris
Phvul.004G017500 1.0kb downstream 1.0kb downstream 1000 false Chr04: 2107198-2108197 Phaseolus vulgaris
Phvul.004G017500 2.0kb upstream 2.0kb upstream 4936 true Chr04: 2102262-2107197 Phaseolus vulgaris
Phvul.004G017500 2.0kb upstream 2.0kb upstream 2000 false Chr04: 2102262-2104261 Phaseolus vulgaris
Phvul.004G017500 2.0kb downstream 2.0kb downstream 4936 true Chr04: 2104262-2109197 Phaseolus vulgaris
Phvul.004G017500 2.0kb downstream 2.0kb downstream 2000 false Chr04: 2107198-2109197 Phaseolus vulgaris
Phvul.004G017500 5.0kb upstream 5.0kb upstream 7936 true Chr04: 2099262-2107197 Phaseolus vulgaris
Phvul.004G017500 5.0kb upstream 5.0kb upstream 5000 false Chr04: 2099262-2104261 Phaseolus vulgaris
Phvul.004G017500 5.0kb downstream 5.0kb downstream 7936 true Chr04: 2104262-2112197 Phaseolus vulgaris
Phvul.004G017500 5.0kb downstream 5.0kb downstream 5000 false Chr04: 2107198-2112197 Phaseolus vulgaris
Phvul.004G017500 10.0kb upstream 10.0kb upstream 12936 true Chr04: 2094262-2107197 Phaseolus vulgaris
Phvul.004G017500 10.0kb upstream 10.0kb upstream 10000 false Chr04: 2094262-2104261 Phaseolus vulgaris
Phvul.004G017500 10.0kb downstream 10.0kb downstream 12936 true Chr04: 2104262-2117197 Phaseolus vulgaris
Phvul.004G017500 10.0kb downstream 10.0kb downstream 10000 false Chr04: 2107198-2117197 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302072 5265 Fabidae View MSA
124070886 5270 Rosid View MSA
123751160 5271 Pentapetalae View MSA
122797641 5272 Eudicot View MSA
122048587 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 86.7306 0.0 235.421 High  
cufflinks 9.33122 0.0 25.6495   Low
cufflinks 39.985 0.0 103.737 High  
cufflinks 49.1281 0.0 127.886 High  
cufflinks 169.413 0.0 493.169 High High
cufflinks 20.7501 0.0 53.9795    
cufflinks 54.13 0.0 142.391 High  
cufflinks 37.8095 0.0 97.9811 High  
cufflinks 93.3979 0.0 256.446 High  
cufflinks 12.1321 0.0 32.6999   Low
cufflinks 102.371 0.0 282.254 High  

0 Strain