Gene : Phvul.004G145200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13471 - TETRATRICOPEPTIDE-LIKE HELICAL Genomic Order:  1479
Name:  ? Phvul.004G145200 Secondary Identifier:  ? PAC:37161967
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G145200 0.5kb upstream 0.5kb upstream 10764 true Chr04: 44644730-44655493 Phaseolus vulgaris
Phvul.004G145200 0.5kb upstream 0.5kb upstream 500 false Chr04: 44644730-44645229 Phaseolus vulgaris
Phvul.004G145200 0.5kb downstream 0.5kb downstream 10764 true Chr04: 44645230-44655993 Phaseolus vulgaris
Phvul.004G145200 0.5kb downstream 0.5kb downstream 500 false Chr04: 44655494-44655993 Phaseolus vulgaris
Phvul.004G145200 1.0kb upstream 1.0kb upstream 11264 true Chr04: 44644230-44655493 Phaseolus vulgaris
Phvul.004G145200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 44644230-44645229 Phaseolus vulgaris
Phvul.004G145200 1.0kb downstream 1.0kb downstream 11264 true Chr04: 44645230-44656493 Phaseolus vulgaris
Phvul.004G145200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 44655494-44656493 Phaseolus vulgaris
Phvul.004G145200 2.0kb upstream 2.0kb upstream 12264 true Chr04: 44643230-44655493 Phaseolus vulgaris
Phvul.004G145200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 44643230-44645229 Phaseolus vulgaris
Phvul.004G145200 2.0kb downstream 2.0kb downstream 12264 true Chr04: 44645230-44657493 Phaseolus vulgaris
Phvul.004G145200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 44655494-44657493 Phaseolus vulgaris
Phvul.004G145200 5.0kb upstream 5.0kb upstream 15264 true Chr04: 44640230-44655493 Phaseolus vulgaris
Phvul.004G145200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 44640230-44645229 Phaseolus vulgaris
Phvul.004G145200 5.0kb downstream 5.0kb downstream 15264 true Chr04: 44645230-44660493 Phaseolus vulgaris
Phvul.004G145200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 44655494-44660493 Phaseolus vulgaris
Phvul.004G145200 10.0kb upstream 10.0kb upstream 20264 true Chr04: 44635230-44655493 Phaseolus vulgaris
Phvul.004G145200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 44635230-44645229 Phaseolus vulgaris
Phvul.004G145200 10.0kb downstream 10.0kb downstream 20264 true Chr04: 44645230-44665493 Phaseolus vulgaris
Phvul.004G145200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 44655494-44665493 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026294 5273 Angiosperm View MSA
122303651 5265 Fabidae View MSA
124063605 5270 Rosid View MSA
123738966 5271 Pentapetalae View MSA
122791971 5272 Eudicot View MSA
121345312 5274 Embryophyte View MSA
123423930 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.32368 0.0 6.58918   Low
cufflinks 4.3546 0.0 11.7169    
cufflinks 5.76423 0.0 15.1937    
cufflinks 2.29643 0.0 6.586   Low
cufflinks 5.82016 0.0 15.3978    
cufflinks 5.55745 0.0 14.6984    
cufflinks 6.46127 0.0 16.937    
cufflinks 5.38573 0.0 14.2469    
cufflinks 6.34374 0.0 16.6682    
cufflinks 7.21379 0.0 18.7975   High
cufflinks 4.63127 0.0 12.4349    

0 Strain