Gene : Phvul.004G147300 P. vulgaris v2.1
Defline:  (1 of 1) K15544 - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (SSU72) Genomic Order:  1500
Name:  ? Phvul.004G147300 Secondary Identifier:  ? PAC:37161812
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G147300 0.5kb upstream 0.5kb upstream 3176 true Chr04: 44886701-44889876 Phaseolus vulgaris
Phvul.004G147300 0.5kb upstream 0.5kb upstream 500 false Chr04: 44886701-44887200 Phaseolus vulgaris
Phvul.004G147300 0.5kb downstream 0.5kb downstream 3176 true Chr04: 44887201-44890376 Phaseolus vulgaris
Phvul.004G147300 0.5kb downstream 0.5kb downstream 500 false Chr04: 44889877-44890376 Phaseolus vulgaris
Phvul.004G147300 1.0kb upstream 1.0kb upstream 3676 true Chr04: 44886201-44889876 Phaseolus vulgaris
Phvul.004G147300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 44886201-44887200 Phaseolus vulgaris
Phvul.004G147300 1.0kb downstream 1.0kb downstream 3676 true Chr04: 44887201-44890876 Phaseolus vulgaris
Phvul.004G147300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 44889877-44890876 Phaseolus vulgaris
Phvul.004G147300 2.0kb upstream 2.0kb upstream 4676 true Chr04: 44885201-44889876 Phaseolus vulgaris
Phvul.004G147300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 44885201-44887200 Phaseolus vulgaris
Phvul.004G147300 2.0kb downstream 2.0kb downstream 4676 true Chr04: 44887201-44891876 Phaseolus vulgaris
Phvul.004G147300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 44889877-44891876 Phaseolus vulgaris
Phvul.004G147300 5.0kb upstream 5.0kb upstream 7676 true Chr04: 44882201-44889876 Phaseolus vulgaris
Phvul.004G147300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 44882201-44887200 Phaseolus vulgaris
Phvul.004G147300 5.0kb downstream 5.0kb downstream 7676 true Chr04: 44887201-44894876 Phaseolus vulgaris
Phvul.004G147300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 44889877-44894876 Phaseolus vulgaris
Phvul.004G147300 10.0kb upstream 10.0kb upstream 12676 true Chr04: 44877201-44889876 Phaseolus vulgaris
Phvul.004G147300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 44877201-44887200 Phaseolus vulgaris
Phvul.004G147300 10.0kb downstream 10.0kb downstream 12676 true Chr04: 44887201-44899876 Phaseolus vulgaris
Phvul.004G147300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 44889877-44899876 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307532 5265 Fabidae View MSA
124062174 5270 Rosid View MSA
123740216 5271 Pentapetalae View MSA
122793137 5272 Eudicot View MSA
122048032 5273 Angiosperm View MSA
121343960 5274 Embryophyte View MSA
123424533 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.54991 0.0 25.2336   High
cufflinks 7.4292 0.0 22.3809    
cufflinks 7.24145 0.0 21.8251    
cufflinks 5.93786 0.0 18.4066    
cufflinks 3.96974 0.0 12.9345   Low
cufflinks 5.49229 0.0 17.1006    
cufflinks 5.15564 0.0 16.1578    
cufflinks 6.63552 0.0 20.1477    
cufflinks 4.40507 0.0 14.0731   Low
cufflinks 6.41505 0.0 19.736    
cufflinks 5.39239 0.0 16.9544    

0 Strain