Gene : Phvul.007G098900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21600 - RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B Genomic Order:  1000
Name:  ? Phvul.007G098900 Secondary Identifier:  ? PAC:37164228
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G098900 0.5kb upstream 0.5kb upstream 4485 true Chr07: 10743709-10748193 Phaseolus vulgaris
Phvul.007G098900 0.5kb upstream 0.5kb upstream 500 false Chr07: 10747694-10748193 Phaseolus vulgaris
Phvul.007G098900 0.5kb downstream 0.5kb downstream 4485 true Chr07: 10743209-10747693 Phaseolus vulgaris
Phvul.007G098900 0.5kb downstream 0.5kb downstream 500 false Chr07: 10743209-10743708 Phaseolus vulgaris
Phvul.007G098900 1.0kb upstream 1.0kb upstream 4985 true Chr07: 10743709-10748693 Phaseolus vulgaris
Phvul.007G098900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 10747694-10748693 Phaseolus vulgaris
Phvul.007G098900 1.0kb downstream 1.0kb downstream 4985 true Chr07: 10742709-10747693 Phaseolus vulgaris
Phvul.007G098900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 10742709-10743708 Phaseolus vulgaris
Phvul.007G098900 2.0kb upstream 2.0kb upstream 5985 true Chr07: 10743709-10749693 Phaseolus vulgaris
Phvul.007G098900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 10747694-10749693 Phaseolus vulgaris
Phvul.007G098900 2.0kb downstream 2.0kb downstream 5985 true Chr07: 10741709-10747693 Phaseolus vulgaris
Phvul.007G098900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 10741709-10743708 Phaseolus vulgaris
Phvul.007G098900 5.0kb upstream 5.0kb upstream 8985 true Chr07: 10743709-10752693 Phaseolus vulgaris
Phvul.007G098900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 10747694-10752693 Phaseolus vulgaris
Phvul.007G098900 5.0kb downstream 5.0kb downstream 8985 true Chr07: 10738709-10747693 Phaseolus vulgaris
Phvul.007G098900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 10738709-10743708 Phaseolus vulgaris
Phvul.007G098900 10.0kb upstream 10.0kb upstream 13985 true Chr07: 10743709-10757693 Phaseolus vulgaris
Phvul.007G098900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 10747694-10757693 Phaseolus vulgaris
Phvul.007G098900 10.0kb downstream 10.0kb downstream 13985 true Chr07: 10733709-10747693 Phaseolus vulgaris
Phvul.007G098900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 10733709-10743708 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308572 5265 Fabidae View MSA
124064445 5270 Rosid View MSA
123747131 5271 Pentapetalae View MSA
122791737 5272 Eudicot View MSA
122046867 5273 Angiosperm View MSA
121350601 5274 Embryophyte View MSA
123427017 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.7637 0.0 41.2864    
cufflinks 15.2623 0.0 40.107    
cufflinks 27.8408 0.0 71.9634   High
cufflinks 11.3942 0.0 30.4703    
cufflinks 8.72424 0.0 23.9236    
cufflinks 21.1576 0.0 54.86   High
cufflinks 6.39828 0.0 17.946   Low
cufflinks 7.24888 0.0 20.1524    
cufflinks 4.88632 0.0 14.1098   Low
cufflinks 17.261 0.0 45.0622    
cufflinks 7.8801 0.0 21.7669    

0 Strain