Gene : Phvul.007G088100 P. vulgaris v2.1
Defline:  (1 of 1) K15326 - tRNA-splicing endonuclease subunit Sen54 (TSEN54) Genomic Order:  891
Name:  ? Phvul.007G088100 Secondary Identifier:  ? PAC:37166733
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G088100 0.5kb upstream 0.5kb upstream 3220 true Chr07: 9043980-9047199 Phaseolus vulgaris
Phvul.007G088100 0.5kb upstream 0.5kb upstream 500 false Chr07: 9046700-9047199 Phaseolus vulgaris
Phvul.007G088100 0.5kb downstream 0.5kb downstream 3220 true Chr07: 9043480-9046699 Phaseolus vulgaris
Phvul.007G088100 0.5kb downstream 0.5kb downstream 500 false Chr07: 9043480-9043979 Phaseolus vulgaris
Phvul.007G088100 1.0kb upstream 1.0kb upstream 3720 true Chr07: 9043980-9047699 Phaseolus vulgaris
Phvul.007G088100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 9046700-9047699 Phaseolus vulgaris
Phvul.007G088100 1.0kb downstream 1.0kb downstream 3720 true Chr07: 9042980-9046699 Phaseolus vulgaris
Phvul.007G088100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 9042980-9043979 Phaseolus vulgaris
Phvul.007G088100 2.0kb upstream 2.0kb upstream 4720 true Chr07: 9043980-9048699 Phaseolus vulgaris
Phvul.007G088100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 9046700-9048699 Phaseolus vulgaris
Phvul.007G088100 2.0kb downstream 2.0kb downstream 4720 true Chr07: 9041980-9046699 Phaseolus vulgaris
Phvul.007G088100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 9041980-9043979 Phaseolus vulgaris
Phvul.007G088100 5.0kb upstream 5.0kb upstream 7720 true Chr07: 9043980-9051699 Phaseolus vulgaris
Phvul.007G088100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 9046700-9051699 Phaseolus vulgaris
Phvul.007G088100 5.0kb downstream 5.0kb downstream 7720 true Chr07: 9038980-9046699 Phaseolus vulgaris
Phvul.007G088100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 9038980-9043979 Phaseolus vulgaris
Phvul.007G088100 10.0kb upstream 10.0kb upstream 12720 true Chr07: 9043980-9056699 Phaseolus vulgaris
Phvul.007G088100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 9046700-9056699 Phaseolus vulgaris
Phvul.007G088100 10.0kb downstream 10.0kb downstream 12720 true Chr07: 9033980-9046699 Phaseolus vulgaris
Phvul.007G088100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 9033980-9043979 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301544 5265 Fabidae View MSA
124066915 5270 Rosid View MSA
123737661 5271 Pentapetalae View MSA
122790630 5272 Eudicot View MSA
122051332 5273 Angiosperm View MSA
121351548 5274 Embryophyte View MSA
123382220 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.42474 0.0 11.0455   High
cufflinks 2.17881 0.0 10.2405    
cufflinks 2.80374 0.0 9.4792    
cufflinks 3.16411 0.0 10.4763   High
cufflinks 1.84864 0.0 6.89208   Low
cufflinks 1.85972 0.0 6.86096   Low
cufflinks 2.85 0.0 9.59459    
cufflinks 3.06912 0.0 13.1732    
cufflinks 2.7807 0.0 12.396    
cufflinks 2.26966 0.0 8.11366    
cufflinks 2.25925 0.0 7.96772    

0 Strain