Gene : Phvul.004G108000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31451:SF1 - MANNAN ENDO-1,4-BETA-MANNOSIDASE 2-RELATED Genomic Order:  1107
Name:  ? Phvul.004G108000 Secondary Identifier:  ? PAC:37162044
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G108000 0.5kb upstream 0.5kb upstream 4955 true Chr04: 37624898-37629852 Phaseolus vulgaris
Phvul.004G108000 0.5kb upstream 0.5kb upstream 500 false Chr04: 37624898-37625397 Phaseolus vulgaris
Phvul.004G108000 0.5kb downstream 0.5kb downstream 4955 true Chr04: 37625398-37630352 Phaseolus vulgaris
Phvul.004G108000 0.5kb downstream 0.5kb downstream 500 false Chr04: 37629853-37630352 Phaseolus vulgaris
Phvul.004G108000 1.0kb upstream 1.0kb upstream 5455 true Chr04: 37624398-37629852 Phaseolus vulgaris
Phvul.004G108000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 37624398-37625397 Phaseolus vulgaris
Phvul.004G108000 1.0kb downstream 1.0kb downstream 5455 true Chr04: 37625398-37630852 Phaseolus vulgaris
Phvul.004G108000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 37629853-37630852 Phaseolus vulgaris
Phvul.004G108000 2.0kb upstream 2.0kb upstream 6455 true Chr04: 37623398-37629852 Phaseolus vulgaris
Phvul.004G108000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 37623398-37625397 Phaseolus vulgaris
Phvul.004G108000 2.0kb downstream 2.0kb downstream 6455 true Chr04: 37625398-37631852 Phaseolus vulgaris
Phvul.004G108000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 37629853-37631852 Phaseolus vulgaris
Phvul.004G108000 5.0kb upstream 5.0kb upstream 9455 true Chr04: 37620398-37629852 Phaseolus vulgaris
Phvul.004G108000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 37620398-37625397 Phaseolus vulgaris
Phvul.004G108000 5.0kb downstream 5.0kb downstream 9455 true Chr04: 37625398-37634852 Phaseolus vulgaris
Phvul.004G108000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 37629853-37634852 Phaseolus vulgaris
Phvul.004G108000 10.0kb upstream 10.0kb upstream 14455 true Chr04: 37615398-37629852 Phaseolus vulgaris
Phvul.004G108000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 37615398-37625397 Phaseolus vulgaris
Phvul.004G108000 10.0kb downstream 10.0kb downstream 14455 true Chr04: 37625398-37639852 Phaseolus vulgaris
Phvul.004G108000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 37629853-37639852 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314019 5265 Fabidae View MSA
124068512 5270 Rosid View MSA
123745616 5271 Pentapetalae View MSA
122797757 5272 Eudicot View MSA
122048761 5273 Angiosperm View MSA
121348976 5274 Embryophyte View MSA
123428551 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.7403 0.0 20.9871    
cufflinks 5.02175 0.0 14.2034    
cufflinks 6.73284 0.0 18.5232    
cufflinks 12.3998 0.0 32.7131    
cufflinks 9.88718 0.0 26.4976    
cufflinks 9.25645 0.0 24.8002    
cufflinks 2.74036 0.0 8.25139    
cufflinks 1.38103 0.0 4.4743   Low
cufflinks 0.934275 0.0 3.19299   Low
cufflinks 5.24341 0.0 14.7777    
cufflinks 22.4112 0.0 57.9362   High

0 Strain