Gene : Phvul.007G055600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11771:SF53 - LINOLEATE 9S-LIPOXYGENASE 5, CHLOROPLASTIC Genomic Order:  556
Name:  ? Phvul.007G055600 Secondary Identifier:  ? PAC:37166089
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G055600 0.5kb upstream 0.5kb upstream 8539 true Chr07: 4632385-4640923 Phaseolus vulgaris
Phvul.007G055600 0.5kb upstream 0.5kb upstream 500 false Chr07: 4632385-4632884 Phaseolus vulgaris
Phvul.007G055600 0.5kb downstream 0.5kb downstream 8539 true Chr07: 4632885-4641423 Phaseolus vulgaris
Phvul.007G055600 0.5kb downstream 0.5kb downstream 500 false Chr07: 4640924-4641423 Phaseolus vulgaris
Phvul.007G055600 1.0kb upstream 1.0kb upstream 9039 true Chr07: 4631885-4640923 Phaseolus vulgaris
Phvul.007G055600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4631885-4632884 Phaseolus vulgaris
Phvul.007G055600 1.0kb downstream 1.0kb downstream 9039 true Chr07: 4632885-4641923 Phaseolus vulgaris
Phvul.007G055600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4640924-4641923 Phaseolus vulgaris
Phvul.007G055600 2.0kb upstream 2.0kb upstream 10039 true Chr07: 4630885-4640923 Phaseolus vulgaris
Phvul.007G055600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4630885-4632884 Phaseolus vulgaris
Phvul.007G055600 2.0kb downstream 2.0kb downstream 10039 true Chr07: 4632885-4642923 Phaseolus vulgaris
Phvul.007G055600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4640924-4642923 Phaseolus vulgaris
Phvul.007G055600 5.0kb upstream 5.0kb upstream 13039 true Chr07: 4627885-4640923 Phaseolus vulgaris
Phvul.007G055600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4627885-4632884 Phaseolus vulgaris
Phvul.007G055600 5.0kb downstream 5.0kb downstream 13039 true Chr07: 4632885-4645923 Phaseolus vulgaris
Phvul.007G055600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4640924-4645923 Phaseolus vulgaris
Phvul.007G055600 10.0kb upstream 10.0kb upstream 18039 true Chr07: 4622885-4640923 Phaseolus vulgaris
Phvul.007G055600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4622885-4632884 Phaseolus vulgaris
Phvul.007G055600 10.0kb downstream 10.0kb downstream 18039 true Chr07: 4632885-4650923 Phaseolus vulgaris
Phvul.007G055600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4640924-4650923 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122793975 5272 Eudicot View MSA
122302185 5265 Fabidae View MSA
124071703 5270 Rosid View MSA
123743828 5271 Pentapetalae View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.21914 0.0 24.0    
cufflinks 13.6173 0.0 35.1983    
cufflinks 6.76015 0.0 17.8486    
cufflinks 2.47534 0.0 7.20629   Low
cufflinks 7.27514 0.0 19.2409    
cufflinks 2.43586 0.0 7.03536   Low
cufflinks 21.0634 0.0 54.9404   High
cufflinks 5.81994 0.0 15.5001    
cufflinks 22.8389 0.0 59.7352   High
cufflinks 6.08956 0.0 16.2544    
cufflinks 6.93709 0.0 18.381    

0 Strain