Gene : Phvul.004G109900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31636:SF4 - SCARECROW-LIKE PROTEIN 8 Genomic Order:  1127
Name:  ? Phvul.004G109900 Secondary Identifier:  ? PAC:37162616
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G109900 0.5kb upstream 0.5kb upstream 3085 true Chr04: 38096617-38099701 Phaseolus vulgaris
Phvul.004G109900 0.5kb upstream 0.5kb upstream 500 false Chr04: 38099202-38099701 Phaseolus vulgaris
Phvul.004G109900 0.5kb downstream 0.5kb downstream 3085 true Chr04: 38096117-38099201 Phaseolus vulgaris
Phvul.004G109900 0.5kb downstream 0.5kb downstream 500 false Chr04: 38096117-38096616 Phaseolus vulgaris
Phvul.004G109900 1.0kb upstream 1.0kb upstream 3585 true Chr04: 38096617-38100201 Phaseolus vulgaris
Phvul.004G109900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 38099202-38100201 Phaseolus vulgaris
Phvul.004G109900 1.0kb downstream 1.0kb downstream 3585 true Chr04: 38095617-38099201 Phaseolus vulgaris
Phvul.004G109900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 38095617-38096616 Phaseolus vulgaris
Phvul.004G109900 2.0kb upstream 2.0kb upstream 4585 true Chr04: 38096617-38101201 Phaseolus vulgaris
Phvul.004G109900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 38099202-38101201 Phaseolus vulgaris
Phvul.004G109900 2.0kb downstream 2.0kb downstream 4585 true Chr04: 38094617-38099201 Phaseolus vulgaris
Phvul.004G109900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 38094617-38096616 Phaseolus vulgaris
Phvul.004G109900 5.0kb upstream 5.0kb upstream 7585 true Chr04: 38096617-38104201 Phaseolus vulgaris
Phvul.004G109900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 38099202-38104201 Phaseolus vulgaris
Phvul.004G109900 5.0kb downstream 5.0kb downstream 7585 true Chr04: 38091617-38099201 Phaseolus vulgaris
Phvul.004G109900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 38091617-38096616 Phaseolus vulgaris
Phvul.004G109900 10.0kb upstream 10.0kb upstream 12585 true Chr04: 38096617-38109201 Phaseolus vulgaris
Phvul.004G109900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 38099202-38109201 Phaseolus vulgaris
Phvul.004G109900 10.0kb downstream 10.0kb downstream 12585 true Chr04: 38086617-38099201 Phaseolus vulgaris
Phvul.004G109900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 38086617-38096616 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308664 5265 Fabidae View MSA
124062619 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.4106 0.0 140.278 High  
cufflinks 31.1653 0.0 81.7816    
cufflinks 12.3149 0.0 32.0614   Low
cufflinks 52.0275 0.0 142.557 High  
cufflinks 23.7848 0.0 61.7364    
cufflinks 19.0895 0.0 49.352   Low
cufflinks 49.6473 0.0 135.75 High  
cufflinks 58.5632 0.0 162.085 High  
cufflinks 29.4231 0.0 77.2474    
cufflinks 74.805 0.0 212.392 High High
cufflinks 29.4865 0.0 77.2529    

0 Strain