Gene : Phvul.004G084800 P. vulgaris v2.1
Defline:  (1 of 55) PF03514 - GRAS domain family (GRAS) Genomic Order:  988
Name:  ? Phvul.004G084800 Secondary Identifier:  ? PAC:37161827
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G084800 0.5kb upstream 0.5kb upstream 1892 true Chr04: 27208340-27210231 Phaseolus vulgaris
Phvul.004G084800 0.5kb upstream 0.5kb upstream 500 false Chr04: 27209732-27210231 Phaseolus vulgaris
Phvul.004G084800 0.5kb downstream 0.5kb downstream 1892 true Chr04: 27207840-27209731 Phaseolus vulgaris
Phvul.004G084800 0.5kb downstream 0.5kb downstream 500 false Chr04: 27207840-27208339 Phaseolus vulgaris
Phvul.004G084800 1.0kb upstream 1.0kb upstream 2392 true Chr04: 27208340-27210731 Phaseolus vulgaris
Phvul.004G084800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 27209732-27210731 Phaseolus vulgaris
Phvul.004G084800 1.0kb downstream 1.0kb downstream 2392 true Chr04: 27207340-27209731 Phaseolus vulgaris
Phvul.004G084800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 27207340-27208339 Phaseolus vulgaris
Phvul.004G084800 2.0kb upstream 2.0kb upstream 3392 true Chr04: 27208340-27211731 Phaseolus vulgaris
Phvul.004G084800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 27209732-27211731 Phaseolus vulgaris
Phvul.004G084800 2.0kb downstream 2.0kb downstream 3392 true Chr04: 27206340-27209731 Phaseolus vulgaris
Phvul.004G084800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 27206340-27208339 Phaseolus vulgaris
Phvul.004G084800 5.0kb upstream 5.0kb upstream 6392 true Chr04: 27208340-27214731 Phaseolus vulgaris
Phvul.004G084800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 27209732-27214731 Phaseolus vulgaris
Phvul.004G084800 5.0kb downstream 5.0kb downstream 6392 true Chr04: 27203340-27209731 Phaseolus vulgaris
Phvul.004G084800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 27203340-27208339 Phaseolus vulgaris
Phvul.004G084800 10.0kb upstream 10.0kb upstream 11392 true Chr04: 27208340-27219731 Phaseolus vulgaris
Phvul.004G084800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 27209732-27219731 Phaseolus vulgaris
Phvul.004G084800 10.0kb downstream 10.0kb downstream 11392 true Chr04: 27198340-27209731 Phaseolus vulgaris
Phvul.004G084800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 27198340-27208339 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253746 5265 Fabidae View MSA
123996216 5270 Rosid View MSA
123570732 5271 Pentapetalae View MSA
122605467 5272 Eudicot View MSA
122048642 5273 Angiosperm View MSA
121311053 5274 Embryophyte View MSA
123348407 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.483643 0.0 1.83907    
cufflinks 0.295442 0.0 1.166 Low  
cufflinks 0.262602 0.0 1.04224 Low  
cufflinks 0.211919 0.0 0.864816 Low Low
cufflinks 0.335654 0.0 1.32155 Low  
cufflinks 0.801085 0.0 2.9105   High
cufflinks 1.35126 0.0 4.66803   High
cufflinks 0.295888 0.0 1.16473 Low  
cufflinks 0.382177 0.0 1.479 Low  
cufflinks 0.594186 0.0 2.22464    
cufflinks 0.358728 0.0 1.40044 Low  

0 Strain