Gene : Phvul.004G089000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22603:SF39 - CHOLINE KINASE 1-RELATED Genomic Order:  966
Name:  ? Phvul.004G089000 Secondary Identifier:  ? PAC:37162518
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-3385 Phaseolus vulgaris pathologic  
Pvulgaris PWY3O-450 Phaseolus vulgaris pathologic  
Pvulgaris PWY4FS-6 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G089000 0.5kb upstream 0.5kb upstream 6479 true Chr04: 24297644-24304122 Phaseolus vulgaris
Phvul.004G089000 0.5kb upstream 0.5kb upstream 500 false Chr04: 24303623-24304122 Phaseolus vulgaris
Phvul.004G089000 0.5kb downstream 0.5kb downstream 6479 true Chr04: 24297144-24303622 Phaseolus vulgaris
Phvul.004G089000 0.5kb downstream 0.5kb downstream 500 false Chr04: 24297144-24297643 Phaseolus vulgaris
Phvul.004G089000 1.0kb upstream 1.0kb upstream 6979 true Chr04: 24297644-24304622 Phaseolus vulgaris
Phvul.004G089000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 24303623-24304622 Phaseolus vulgaris
Phvul.004G089000 1.0kb downstream 1.0kb downstream 6979 true Chr04: 24296644-24303622 Phaseolus vulgaris
Phvul.004G089000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 24296644-24297643 Phaseolus vulgaris
Phvul.004G089000 2.0kb upstream 2.0kb upstream 7979 true Chr04: 24297644-24305622 Phaseolus vulgaris
Phvul.004G089000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 24303623-24305622 Phaseolus vulgaris
Phvul.004G089000 2.0kb downstream 2.0kb downstream 7979 true Chr04: 24295644-24303622 Phaseolus vulgaris
Phvul.004G089000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 24295644-24297643 Phaseolus vulgaris
Phvul.004G089000 5.0kb upstream 5.0kb upstream 10979 true Chr04: 24297644-24308622 Phaseolus vulgaris
Phvul.004G089000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 24303623-24308622 Phaseolus vulgaris
Phvul.004G089000 5.0kb downstream 5.0kb downstream 10979 true Chr04: 24292644-24303622 Phaseolus vulgaris
Phvul.004G089000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 24292644-24297643 Phaseolus vulgaris
Phvul.004G089000 10.0kb upstream 10.0kb upstream 15979 true Chr04: 24297644-24313622 Phaseolus vulgaris
Phvul.004G089000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 24303623-24313622 Phaseolus vulgaris
Phvul.004G089000 10.0kb downstream 10.0kb downstream 15979 true Chr04: 24287644-24303622 Phaseolus vulgaris
Phvul.004G089000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 24287644-24297643 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311650 5265 Fabidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.5513 0.0 76.4115   High
cufflinks 14.0368 0.0 37.4997    
cufflinks 26.0621 0.0 67.4883    
cufflinks 21.159 0.0 55.3431    
cufflinks 12.9373 0.0 34.9982    
cufflinks 27.099 0.0 70.156    
cufflinks 13.9414 0.0 37.3161    
cufflinks 8.83661 0.0 24.475   Low
cufflinks 9.5815 0.0 26.5175   Low
cufflinks 27.3789 0.0 70.8763   High
cufflinks 19.8181 0.0 51.9845    

0 Strain