Gene : Phvul.004G092376 P. vulgaris v2.1
Defline:  (1 of 13) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  956
Name:  ? Phvul.004G092376 Secondary Identifier:  ? PAC:37163483
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G092376 0.5kb upstream 0.5kb upstream 1448 true Chr04: 23277581-23279028 Phaseolus vulgaris
Phvul.004G092376 0.5kb upstream 0.5kb upstream 500 false Chr04: 23277581-23278080 Phaseolus vulgaris
Phvul.004G092376 0.5kb downstream 0.5kb downstream 1448 true Chr04: 23278081-23279528 Phaseolus vulgaris
Phvul.004G092376 0.5kb downstream 0.5kb downstream 500 false Chr04: 23279029-23279528 Phaseolus vulgaris
Phvul.004G092376 1.0kb upstream 1.0kb upstream 1948 true Chr04: 23277081-23279028 Phaseolus vulgaris
Phvul.004G092376 1.0kb upstream 1.0kb upstream 1000 false Chr04: 23277081-23278080 Phaseolus vulgaris
Phvul.004G092376 1.0kb downstream 1.0kb downstream 1948 true Chr04: 23278081-23280028 Phaseolus vulgaris
Phvul.004G092376 1.0kb downstream 1.0kb downstream 1000 false Chr04: 23279029-23280028 Phaseolus vulgaris
Phvul.004G092376 2.0kb upstream 2.0kb upstream 2948 true Chr04: 23276081-23279028 Phaseolus vulgaris
Phvul.004G092376 2.0kb upstream 2.0kb upstream 2000 false Chr04: 23276081-23278080 Phaseolus vulgaris
Phvul.004G092376 2.0kb downstream 2.0kb downstream 2948 true Chr04: 23278081-23281028 Phaseolus vulgaris
Phvul.004G092376 2.0kb downstream 2.0kb downstream 2000 false Chr04: 23279029-23281028 Phaseolus vulgaris
Phvul.004G092376 5.0kb upstream 5.0kb upstream 5948 true Chr04: 23273081-23279028 Phaseolus vulgaris
Phvul.004G092376 5.0kb upstream 5.0kb upstream 5000 false Chr04: 23273081-23278080 Phaseolus vulgaris
Phvul.004G092376 5.0kb downstream 5.0kb downstream 5948 true Chr04: 23278081-23284028 Phaseolus vulgaris
Phvul.004G092376 5.0kb downstream 5.0kb downstream 5000 false Chr04: 23279029-23284028 Phaseolus vulgaris
Phvul.004G092376 10.0kb upstream 10.0kb upstream 10948 true Chr04: 23268081-23279028 Phaseolus vulgaris
Phvul.004G092376 10.0kb upstream 10.0kb upstream 10000 false Chr04: 23268081-23278080 Phaseolus vulgaris
Phvul.004G092376 10.0kb downstream 10.0kb downstream 10948 true Chr04: 23278081-23289028 Phaseolus vulgaris
Phvul.004G092376 10.0kb downstream 10.0kb downstream 10000 false Chr04: 23279029-23289028 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251571 5265 Fabidae Singleton cluster - no MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 149.171 0.0 414.278 High  
cufflinks 391.659 0.0 1239.42 High  
cufflinks 4667.99 0.0 28156.6 High High
cufflinks 128.519 0.0 350.965 High  
cufflinks 581.639 0.0 2030.76 High  
cufflinks 1389.18 0.0 5931.34 High  
cufflinks 0.42679 0.0 1.65522 Low Low
cufflinks 0.123009 0.0 0.531079 Low Low
cufflinks 0.494043 0.0 1.89781 Low Low
cufflinks 33.3237 0.0 86.4293    
cufflinks 256.549 0.0 763.787 High  

0 Strain