Gene : Phvul.007G025400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12385:SF36 - PLASMA-MEMBRANE CHOLINE TRANSPORTER-LIKE PROTEIN Genomic Order:  251
Name:  ? Phvul.007G025400 Secondary Identifier:  ? PAC:37165603
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G025400 0.5kb upstream 0.5kb upstream 4313 true Chr07: 1900495-1904807 Phaseolus vulgaris
Phvul.007G025400 0.5kb upstream 0.5kb upstream 500 false Chr07: 1900495-1900994 Phaseolus vulgaris
Phvul.007G025400 0.5kb downstream 0.5kb downstream 4313 true Chr07: 1900995-1905307 Phaseolus vulgaris
Phvul.007G025400 0.5kb downstream 0.5kb downstream 500 false Chr07: 1904808-1905307 Phaseolus vulgaris
Phvul.007G025400 1.0kb upstream 1.0kb upstream 4813 true Chr07: 1899995-1904807 Phaseolus vulgaris
Phvul.007G025400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 1899995-1900994 Phaseolus vulgaris
Phvul.007G025400 1.0kb downstream 1.0kb downstream 4813 true Chr07: 1900995-1905807 Phaseolus vulgaris
Phvul.007G025400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 1904808-1905807 Phaseolus vulgaris
Phvul.007G025400 2.0kb upstream 2.0kb upstream 5813 true Chr07: 1898995-1904807 Phaseolus vulgaris
Phvul.007G025400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 1898995-1900994 Phaseolus vulgaris
Phvul.007G025400 2.0kb downstream 2.0kb downstream 5813 true Chr07: 1900995-1906807 Phaseolus vulgaris
Phvul.007G025400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 1904808-1906807 Phaseolus vulgaris
Phvul.007G025400 5.0kb upstream 5.0kb upstream 8813 true Chr07: 1895995-1904807 Phaseolus vulgaris
Phvul.007G025400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 1895995-1900994 Phaseolus vulgaris
Phvul.007G025400 5.0kb downstream 5.0kb downstream 8813 true Chr07: 1900995-1909807 Phaseolus vulgaris
Phvul.007G025400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 1904808-1909807 Phaseolus vulgaris
Phvul.007G025400 10.0kb upstream 10.0kb upstream 13813 true Chr07: 1890995-1904807 Phaseolus vulgaris
Phvul.007G025400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 1890995-1900994 Phaseolus vulgaris
Phvul.007G025400 10.0kb downstream 10.0kb downstream 13813 true Chr07: 1900995-1914807 Phaseolus vulgaris
Phvul.007G025400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 1904808-1914807 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301299 5265 Fabidae View MSA
124063041 5270 Rosid View MSA
123736673 5271 Pentapetalae View MSA
122792379 5272 Eudicot View MSA
122042832 5273 Angiosperm View MSA
121344178 5274 Embryophyte View MSA
123428325 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.05373 0.0 12.1294   Low
cufflinks 6.75084 0.0 19.1992    
cufflinks 6.10765 0.0 17.5269    
cufflinks 5.36549 0.0 15.7644    
cufflinks 6.38655 0.0 18.2242    
cufflinks 5.2328 0.0 15.3046    
cufflinks 7.06175 0.0 20.0982    
cufflinks 6.04293 0.0 17.4289    
cufflinks 8.69371 0.0 24.3619   High
cufflinks 5.87098 0.0 16.8641    
cufflinks 5.61121 0.0 16.273    

0 Strain