Gene : Phvul.004G081000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10003:SF31 - SUPEROXIDE DISMUTASE [CU-ZN] 3 Genomic Order:  887
Name:  ? Phvul.004G081000 Secondary Identifier:  ? PAC:37162793
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris DETOX1-PWY Phaseolus vulgaris pathologic  
Pvulgaris DETOX1-PWY-1 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G081000 0.5kb upstream 0.5kb upstream 8839 true Chr04: 19287298-19296136 Phaseolus vulgaris
Phvul.004G081000 0.5kb upstream 0.5kb upstream 500 false Chr04: 19295637-19296136 Phaseolus vulgaris
Phvul.004G081000 0.5kb downstream 0.5kb downstream 8839 true Chr04: 19286798-19295636 Phaseolus vulgaris
Phvul.004G081000 0.5kb downstream 0.5kb downstream 500 false Chr04: 19286798-19287297 Phaseolus vulgaris
Phvul.004G081000 1.0kb upstream 1.0kb upstream 9339 true Chr04: 19287298-19296636 Phaseolus vulgaris
Phvul.004G081000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 19295637-19296636 Phaseolus vulgaris
Phvul.004G081000 1.0kb downstream 1.0kb downstream 9339 true Chr04: 19286298-19295636 Phaseolus vulgaris
Phvul.004G081000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 19286298-19287297 Phaseolus vulgaris
Phvul.004G081000 2.0kb upstream 2.0kb upstream 10339 true Chr04: 19287298-19297636 Phaseolus vulgaris
Phvul.004G081000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 19295637-19297636 Phaseolus vulgaris
Phvul.004G081000 2.0kb downstream 2.0kb downstream 10339 true Chr04: 19285298-19295636 Phaseolus vulgaris
Phvul.004G081000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 19285298-19287297 Phaseolus vulgaris
Phvul.004G081000 5.0kb upstream 5.0kb upstream 13339 true Chr04: 19287298-19300636 Phaseolus vulgaris
Phvul.004G081000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 19295637-19300636 Phaseolus vulgaris
Phvul.004G081000 5.0kb downstream 5.0kb downstream 13339 true Chr04: 19282298-19295636 Phaseolus vulgaris
Phvul.004G081000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 19282298-19287297 Phaseolus vulgaris
Phvul.004G081000 10.0kb upstream 10.0kb upstream 18339 true Chr04: 19287298-19305636 Phaseolus vulgaris
Phvul.004G081000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 19295637-19305636 Phaseolus vulgaris
Phvul.004G081000 10.0kb downstream 10.0kb downstream 18339 true Chr04: 19277298-19295636 Phaseolus vulgaris
Phvul.004G081000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 19277298-19287297 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302817 5265 Fabidae View MSA
124071759 5270 Rosid View MSA
123743890 5271 Pentapetalae View MSA
122797763 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.32353 0.0 26.8653    
cufflinks 7.52415 0.0 24.6502    
cufflinks 15.0279 0.0 59.8941   High
cufflinks 5.84773 0.0 20.4282    
cufflinks 4.97698 0.0 23.1007    
cufflinks 5.54685 0.0 24.8737    
cufflinks 4.92105 0.0 22.384    
cufflinks 11.2074 0.0 41.43   High
cufflinks 3.59733 0.0 13.9857   Low
cufflinks 9.67203 0.0 38.0222    
cufflinks 5.73584 0.0 25.1867    

0 Strain