Gene : Phvul.004G079800 P. vulgaris v2.1
Defline:  (1 of 1) K09500 - T-complex protein 1 subunit theta (CCT8) Genomic Order:  875
Name:  ? Phvul.004G079800 Secondary Identifier:  ? PAC:37161616
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G079800 0.5kb upstream 0.5kb upstream 10159 true Chr04: 18928103-18938261 Phaseolus vulgaris
Phvul.004G079800 0.5kb upstream 0.5kb upstream 500 false Chr04: 18937762-18938261 Phaseolus vulgaris
Phvul.004G079800 0.5kb downstream 0.5kb downstream 10159 true Chr04: 18927603-18937761 Phaseolus vulgaris
Phvul.004G079800 0.5kb downstream 0.5kb downstream 500 false Chr04: 18927603-18928102 Phaseolus vulgaris
Phvul.004G079800 1.0kb upstream 1.0kb upstream 10659 true Chr04: 18928103-18938761 Phaseolus vulgaris
Phvul.004G079800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 18937762-18938761 Phaseolus vulgaris
Phvul.004G079800 1.0kb downstream 1.0kb downstream 10659 true Chr04: 18927103-18937761 Phaseolus vulgaris
Phvul.004G079800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 18927103-18928102 Phaseolus vulgaris
Phvul.004G079800 2.0kb upstream 2.0kb upstream 11659 true Chr04: 18928103-18939761 Phaseolus vulgaris
Phvul.004G079800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 18937762-18939761 Phaseolus vulgaris
Phvul.004G079800 2.0kb downstream 2.0kb downstream 11659 true Chr04: 18926103-18937761 Phaseolus vulgaris
Phvul.004G079800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 18926103-18928102 Phaseolus vulgaris
Phvul.004G079800 5.0kb upstream 5.0kb upstream 14659 true Chr04: 18928103-18942761 Phaseolus vulgaris
Phvul.004G079800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 18937762-18942761 Phaseolus vulgaris
Phvul.004G079800 5.0kb downstream 5.0kb downstream 14659 true Chr04: 18923103-18937761 Phaseolus vulgaris
Phvul.004G079800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 18923103-18928102 Phaseolus vulgaris
Phvul.004G079800 10.0kb upstream 10.0kb upstream 19659 true Chr04: 18928103-18947761 Phaseolus vulgaris
Phvul.004G079800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 18937762-18947761 Phaseolus vulgaris
Phvul.004G079800 10.0kb downstream 10.0kb downstream 19659 true Chr04: 18918103-18937761 Phaseolus vulgaris
Phvul.004G079800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 18918103-18928102 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313715 5265 Fabidae View MSA
124062968 5270 Rosid View MSA
123746053 5271 Pentapetalae View MSA
122787036 5272 Eudicot View MSA
122044637 5273 Angiosperm View MSA
121347500 5274 Embryophyte View MSA
123428157 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.9167 0.0 117.793 High Low
cufflinks 67.0176 0.0 186.717 High High
cufflinks 43.943 0.0 117.853 High Low
cufflinks 59.467 0.0 162.251 High  
cufflinks 53.7136 0.0 145.541 High  
cufflinks 42.0999 0.0 112.434 High Low
cufflinks 56.9539 0.0 156.111 High  
cufflinks 53.1145 0.0 145.006 High  
cufflinks 73.8603 0.0 207.736 High High
cufflinks 47.6472 0.0 128.318 High  
cufflinks 57.3792 0.0 156.665 High  

0 Strain