Gene : Phvul.007G169300 P. vulgaris v2.1
Defline:  (1 of 12) K10523 - speckle-type POZ protein (SPOP) Genomic Order:  1555
Name:  ? Phvul.007G169300 Secondary Identifier:  ? PAC:37167523
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G169300 0.5kb upstream 0.5kb upstream 5819 true Chr07: 28586228-28592046 Phaseolus vulgaris
Phvul.007G169300 0.5kb upstream 0.5kb upstream 500 false Chr07: 28586228-28586727 Phaseolus vulgaris
Phvul.007G169300 0.5kb downstream 0.5kb downstream 5819 true Chr07: 28586728-28592546 Phaseolus vulgaris
Phvul.007G169300 0.5kb downstream 0.5kb downstream 500 false Chr07: 28592047-28592546 Phaseolus vulgaris
Phvul.007G169300 1.0kb upstream 1.0kb upstream 6319 true Chr07: 28585728-28592046 Phaseolus vulgaris
Phvul.007G169300 1.0kb upstream 1.0kb upstream 1000 false Chr07: 28585728-28586727 Phaseolus vulgaris
Phvul.007G169300 1.0kb downstream 1.0kb downstream 6319 true Chr07: 28586728-28593046 Phaseolus vulgaris
Phvul.007G169300 1.0kb downstream 1.0kb downstream 1000 false Chr07: 28592047-28593046 Phaseolus vulgaris
Phvul.007G169300 2.0kb upstream 2.0kb upstream 7319 true Chr07: 28584728-28592046 Phaseolus vulgaris
Phvul.007G169300 2.0kb upstream 2.0kb upstream 2000 false Chr07: 28584728-28586727 Phaseolus vulgaris
Phvul.007G169300 2.0kb downstream 2.0kb downstream 7319 true Chr07: 28586728-28594046 Phaseolus vulgaris
Phvul.007G169300 2.0kb downstream 2.0kb downstream 2000 false Chr07: 28592047-28594046 Phaseolus vulgaris
Phvul.007G169300 5.0kb upstream 5.0kb upstream 10319 true Chr07: 28581728-28592046 Phaseolus vulgaris
Phvul.007G169300 5.0kb upstream 5.0kb upstream 5000 false Chr07: 28581728-28586727 Phaseolus vulgaris
Phvul.007G169300 5.0kb downstream 5.0kb downstream 10319 true Chr07: 28586728-28597046 Phaseolus vulgaris
Phvul.007G169300 5.0kb downstream 5.0kb downstream 5000 false Chr07: 28592047-28597046 Phaseolus vulgaris
Phvul.007G169300 10.0kb upstream 10.0kb upstream 15319 true Chr07: 28576728-28592046 Phaseolus vulgaris
Phvul.007G169300 10.0kb upstream 10.0kb upstream 10000 false Chr07: 28576728-28586727 Phaseolus vulgaris
Phvul.007G169300 10.0kb downstream 10.0kb downstream 15319 true Chr07: 28586728-28602046 Phaseolus vulgaris
Phvul.007G169300 10.0kb downstream 10.0kb downstream 10000 false Chr07: 28592047-28602046 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040960 5273 Angiosperm View MSA
122309857 5265 Fabidae View MSA
124064148 5270 Rosid View MSA
123743633 5271 Pentapetalae View MSA
122791318 5272 Eudicot View MSA
121348457 5274 Embryophyte View MSA
123428082 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.9722 0.0 61.9723    
cufflinks 15.7207 0.0 54.4163    
cufflinks 13.0475 0.0 46.2984   Low
cufflinks 15.3926 0.0 53.7075    
cufflinks 15.0551 0.0 56.9921    
cufflinks 13.3845 0.0 52.0545    
cufflinks 16.6145 0.0 63.3495    
cufflinks 15.3594 0.0 53.4705    
cufflinks 13.4542 0.0 52.1733    
cufflinks 25.9521 0.0 99.8095   High
cufflinks 15.2589 0.0 57.6516    

0 Strain