Gene : Phvul.007G174600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED Genomic Order:  1605
Name:  ? Phvul.007G174600 Secondary Identifier:  ? PAC:37166789
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G174600 0.5kb upstream 0.5kb upstream 5590 true Chr07: 29254372-29259961 Phaseolus vulgaris
Phvul.007G174600 0.5kb upstream 0.5kb upstream 500 false Chr07: 29254372-29254871 Phaseolus vulgaris
Phvul.007G174600 0.5kb downstream 0.5kb downstream 5590 true Chr07: 29254872-29260461 Phaseolus vulgaris
Phvul.007G174600 0.5kb downstream 0.5kb downstream 500 false Chr07: 29259962-29260461 Phaseolus vulgaris
Phvul.007G174600 1.0kb upstream 1.0kb upstream 6090 true Chr07: 29253872-29259961 Phaseolus vulgaris
Phvul.007G174600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 29253872-29254871 Phaseolus vulgaris
Phvul.007G174600 1.0kb downstream 1.0kb downstream 6090 true Chr07: 29254872-29260961 Phaseolus vulgaris
Phvul.007G174600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 29259962-29260961 Phaseolus vulgaris
Phvul.007G174600 2.0kb upstream 2.0kb upstream 7090 true Chr07: 29252872-29259961 Phaseolus vulgaris
Phvul.007G174600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 29252872-29254871 Phaseolus vulgaris
Phvul.007G174600 2.0kb downstream 2.0kb downstream 7090 true Chr07: 29254872-29261961 Phaseolus vulgaris
Phvul.007G174600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 29259962-29261961 Phaseolus vulgaris
Phvul.007G174600 5.0kb upstream 5.0kb upstream 10090 true Chr07: 29249872-29259961 Phaseolus vulgaris
Phvul.007G174600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 29249872-29254871 Phaseolus vulgaris
Phvul.007G174600 5.0kb downstream 5.0kb downstream 10090 true Chr07: 29254872-29264961 Phaseolus vulgaris
Phvul.007G174600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 29259962-29264961 Phaseolus vulgaris
Phvul.007G174600 10.0kb upstream 10.0kb upstream 15090 true Chr07: 29244872-29259961 Phaseolus vulgaris
Phvul.007G174600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 29244872-29254871 Phaseolus vulgaris
Phvul.007G174600 10.0kb downstream 10.0kb downstream 15090 true Chr07: 29254872-29269961 Phaseolus vulgaris
Phvul.007G174600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 29259962-29269961 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311802 5265 Fabidae View MSA
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.02853 0.0 13.6115   Low
cufflinks 8.43744 0.0 22.0483    
cufflinks 6.71219 0.0 17.7304   Low
cufflinks 8.44936 0.0 22.1453    
cufflinks 10.8962 0.0 28.2712    
cufflinks 10.5944 0.0 27.463    
cufflinks 17.8871 0.0 46.3609   High
cufflinks 13.8313 0.0 35.7524    
cufflinks 15.8038 0.0 40.866    
cufflinks 13.9299 0.0 36.0062    
cufflinks 14.4459 0.0 37.3399    

0 Strain