Gene : Phvul.005G022000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR14493:SF47 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 Genomic Order:  217
Name:  ? Phvul.005G022000 Secondary Identifier:  ? PAC:37152818
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G022000 0.5kb upstream 0.5kb upstream 4849 true Chr05: 1968272-1973120 Phaseolus vulgaris
Phvul.005G022000 0.5kb upstream 0.5kb upstream 500 false Chr05: 1972621-1973120 Phaseolus vulgaris
Phvul.005G022000 0.5kb downstream 0.5kb downstream 4849 true Chr05: 1967772-1972620 Phaseolus vulgaris
Phvul.005G022000 0.5kb downstream 0.5kb downstream 500 false Chr05: 1967772-1968271 Phaseolus vulgaris
Phvul.005G022000 1.0kb upstream 1.0kb upstream 5349 true Chr05: 1968272-1973620 Phaseolus vulgaris
Phvul.005G022000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1972621-1973620 Phaseolus vulgaris
Phvul.005G022000 1.0kb downstream 1.0kb downstream 5349 true Chr05: 1967272-1972620 Phaseolus vulgaris
Phvul.005G022000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1967272-1968271 Phaseolus vulgaris
Phvul.005G022000 2.0kb upstream 2.0kb upstream 6349 true Chr05: 1968272-1974620 Phaseolus vulgaris
Phvul.005G022000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1972621-1974620 Phaseolus vulgaris
Phvul.005G022000 2.0kb downstream 2.0kb downstream 6349 true Chr05: 1966272-1972620 Phaseolus vulgaris
Phvul.005G022000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1966272-1968271 Phaseolus vulgaris
Phvul.005G022000 5.0kb upstream 5.0kb upstream 9349 true Chr05: 1968272-1977620 Phaseolus vulgaris
Phvul.005G022000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1972621-1977620 Phaseolus vulgaris
Phvul.005G022000 5.0kb downstream 5.0kb downstream 9349 true Chr05: 1963272-1972620 Phaseolus vulgaris
Phvul.005G022000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1963272-1968271 Phaseolus vulgaris
Phvul.005G022000 10.0kb upstream 10.0kb upstream 14349 true Chr05: 1968272-1982620 Phaseolus vulgaris
Phvul.005G022000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1972621-1982620 Phaseolus vulgaris
Phvul.005G022000 10.0kb downstream 10.0kb downstream 14349 true Chr05: 1958272-1972620 Phaseolus vulgaris
Phvul.005G022000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1958272-1968271 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314270 5265 Fabidae View MSA
124070984 5270 Rosid View MSA
123746400 5271 Pentapetalae View MSA
122787606 5272 Eudicot View MSA
122046013 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.6447 0.0 45.6113    
cufflinks 23.2785 0.0 60.4057    
cufflinks 15.2965 0.0 39.5553   Low
cufflinks 55.7682 0.0 153.003 High High
cufflinks 36.9225 0.0 97.958 High  
cufflinks 19.417 0.0 50.2162    
cufflinks 20.4662 0.0 52.9672    
cufflinks 17.8795 0.0 46.2223    
cufflinks 31.0917 0.0 81.4588 High  
cufflinks 37.7905 0.0 100.587 High High
cufflinks 25.1411 0.0 65.3392    

0 Strain