Gene : Phvul.007G144000 P. vulgaris v2.1
Defline:  (1 of 2) K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) Genomic Order:  1304
Name:  ? Phvul.007G144000 Secondary Identifier:  ? PAC:37166315
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G144000 0.5kb upstream 0.5kb upstream 2837 true Chr07: 23591757-23594593 Phaseolus vulgaris
Phvul.007G144000 0.5kb upstream 0.5kb upstream 500 false Chr07: 23594094-23594593 Phaseolus vulgaris
Phvul.007G144000 0.5kb downstream 0.5kb downstream 2837 true Chr07: 23591257-23594093 Phaseolus vulgaris
Phvul.007G144000 0.5kb downstream 0.5kb downstream 500 false Chr07: 23591257-23591756 Phaseolus vulgaris
Phvul.007G144000 1.0kb upstream 1.0kb upstream 3337 true Chr07: 23591757-23595093 Phaseolus vulgaris
Phvul.007G144000 1.0kb upstream 1.0kb upstream 1000 false Chr07: 23594094-23595093 Phaseolus vulgaris
Phvul.007G144000 1.0kb downstream 1.0kb downstream 3337 true Chr07: 23590757-23594093 Phaseolus vulgaris
Phvul.007G144000 1.0kb downstream 1.0kb downstream 1000 false Chr07: 23590757-23591756 Phaseolus vulgaris
Phvul.007G144000 2.0kb upstream 2.0kb upstream 4337 true Chr07: 23591757-23596093 Phaseolus vulgaris
Phvul.007G144000 2.0kb upstream 2.0kb upstream 2000 false Chr07: 23594094-23596093 Phaseolus vulgaris
Phvul.007G144000 2.0kb downstream 2.0kb downstream 4337 true Chr07: 23589757-23594093 Phaseolus vulgaris
Phvul.007G144000 2.0kb downstream 2.0kb downstream 2000 false Chr07: 23589757-23591756 Phaseolus vulgaris
Phvul.007G144000 5.0kb upstream 5.0kb upstream 7337 true Chr07: 23591757-23599093 Phaseolus vulgaris
Phvul.007G144000 5.0kb upstream 5.0kb upstream 5000 false Chr07: 23594094-23599093 Phaseolus vulgaris
Phvul.007G144000 5.0kb downstream 5.0kb downstream 7337 true Chr07: 23586757-23594093 Phaseolus vulgaris
Phvul.007G144000 5.0kb downstream 5.0kb downstream 5000 false Chr07: 23586757-23591756 Phaseolus vulgaris
Phvul.007G144000 10.0kb upstream 10.0kb upstream 12337 true Chr07: 23591757-23604093 Phaseolus vulgaris
Phvul.007G144000 10.0kb upstream 10.0kb upstream 10000 false Chr07: 23594094-23604093 Phaseolus vulgaris
Phvul.007G144000 10.0kb downstream 10.0kb downstream 12337 true Chr07: 23581757-23594093 Phaseolus vulgaris
Phvul.007G144000 10.0kb downstream 10.0kb downstream 10000 false Chr07: 23581757-23591756 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309852 5265 Fabidae View MSA
124074135 5270 Rosid View MSA
123737772 5271 Pentapetalae View MSA
122793986 5272 Eudicot View MSA
122047121 5273 Angiosperm View MSA
121348903 5274 Embryophyte View MSA
123424585 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.6889 0.0 118.097 High  
cufflinks 38.2964 0.0 99.224 High  
cufflinks 62.0635 0.0 160.859 High High
cufflinks 60.074 0.0 155.477 High High
cufflinks 43.8618 0.0 113.422 High  
cufflinks 35.9965 0.0 93.3608 High  
cufflinks 34.6335 0.0 89.7484 High  
cufflinks 34.4226 0.0 89.2498 High  
cufflinks 39.9659 0.0 103.359 High  
cufflinks 18.9285 0.0 51.0385   Low
cufflinks 39.4494 0.0 102.117 High  

0 Strain