Gene : Phvul.004G170700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10209:SF146 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Genomic Order:  1750
Name:  ? Phvul.004G170700 Secondary Identifier:  ? PAC:37162183
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ETHYL-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G170700 0.5kb upstream 0.5kb upstream 4718 true Chr04: 47431160-47435877 Phaseolus vulgaris
Phvul.004G170700 0.5kb upstream 0.5kb upstream 500 false Chr04: 47431160-47431659 Phaseolus vulgaris
Phvul.004G170700 0.5kb downstream 0.5kb downstream 4718 true Chr04: 47431660-47436377 Phaseolus vulgaris
Phvul.004G170700 0.5kb downstream 0.5kb downstream 500 false Chr04: 47435878-47436377 Phaseolus vulgaris
Phvul.004G170700 1.0kb upstream 1.0kb upstream 5218 true Chr04: 47430660-47435877 Phaseolus vulgaris
Phvul.004G170700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47430660-47431659 Phaseolus vulgaris
Phvul.004G170700 1.0kb downstream 1.0kb downstream 5218 true Chr04: 47431660-47436877 Phaseolus vulgaris
Phvul.004G170700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47435878-47436877 Phaseolus vulgaris
Phvul.004G170700 2.0kb upstream 2.0kb upstream 6218 true Chr04: 47429660-47435877 Phaseolus vulgaris
Phvul.004G170700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47429660-47431659 Phaseolus vulgaris
Phvul.004G170700 2.0kb downstream 2.0kb downstream 6218 true Chr04: 47431660-47437877 Phaseolus vulgaris
Phvul.004G170700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47435878-47437877 Phaseolus vulgaris
Phvul.004G170700 5.0kb upstream 5.0kb upstream 9218 true Chr04: 47426660-47435877 Phaseolus vulgaris
Phvul.004G170700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47426660-47431659 Phaseolus vulgaris
Phvul.004G170700 5.0kb downstream 5.0kb downstream 9218 true Chr04: 47431660-47440877 Phaseolus vulgaris
Phvul.004G170700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47435878-47440877 Phaseolus vulgaris
Phvul.004G170700 10.0kb upstream 10.0kb upstream 14218 true Chr04: 47421660-47435877 Phaseolus vulgaris
Phvul.004G170700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47421660-47431659 Phaseolus vulgaris
Phvul.004G170700 10.0kb downstream 10.0kb downstream 14218 true Chr04: 47431660-47445877 Phaseolus vulgaris
Phvul.004G170700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47435878-47445877 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302067 5265 Fabidae View MSA
124061088 5270 Rosid View MSA
123745959 5271 Pentapetalae View MSA
122787426 5272 Eudicot View MSA
122044176 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121345815 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.8322 0.0 79.748   High
cufflinks 14.5801 0.0 38.4072    
cufflinks 5.31373 0.0 15.1593   Low
cufflinks 37.6517 0.0 97.5362 High High
cufflinks 6.38016 0.0 18.0928    
cufflinks 4.71638 0.0 13.6683   Low
cufflinks 17.7658 0.0 46.2855    
cufflinks 9.32887 0.0 25.2793    
cufflinks 9.33648 0.0 25.45    
cufflinks 23.3551 0.0 60.4674    
cufflinks 6.1062 0.0 17.3594    

0 Strain