Gene : Phvul.004G173000 P. vulgaris v2.1
Defline:  (1 of 3) K12194 - charged multivesicular body protein 4 (CHMP4, SNF7, VPS32) Genomic Order:  1773
Name:  ? Phvul.004G173000 Secondary Identifier:  ? PAC:37163061
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G173000 0.5kb upstream 0.5kb upstream 3547 true Chr04: 47553920-47557466 Phaseolus vulgaris
Phvul.004G173000 0.5kb upstream 0.5kb upstream 500 false Chr04: 47553920-47554419 Phaseolus vulgaris
Phvul.004G173000 0.5kb downstream 0.5kb downstream 3547 true Chr04: 47554420-47557966 Phaseolus vulgaris
Phvul.004G173000 0.5kb downstream 0.5kb downstream 500 false Chr04: 47557467-47557966 Phaseolus vulgaris
Phvul.004G173000 1.0kb upstream 1.0kb upstream 4047 true Chr04: 47553420-47557466 Phaseolus vulgaris
Phvul.004G173000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47553420-47554419 Phaseolus vulgaris
Phvul.004G173000 1.0kb downstream 1.0kb downstream 4047 true Chr04: 47554420-47558466 Phaseolus vulgaris
Phvul.004G173000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47557467-47558466 Phaseolus vulgaris
Phvul.004G173000 2.0kb upstream 2.0kb upstream 5047 true Chr04: 47552420-47557466 Phaseolus vulgaris
Phvul.004G173000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47552420-47554419 Phaseolus vulgaris
Phvul.004G173000 2.0kb downstream 2.0kb downstream 5047 true Chr04: 47554420-47559466 Phaseolus vulgaris
Phvul.004G173000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47557467-47559466 Phaseolus vulgaris
Phvul.004G173000 5.0kb upstream 5.0kb upstream 8047 true Chr04: 47549420-47557466 Phaseolus vulgaris
Phvul.004G173000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47549420-47554419 Phaseolus vulgaris
Phvul.004G173000 5.0kb downstream 5.0kb downstream 8047 true Chr04: 47554420-47562466 Phaseolus vulgaris
Phvul.004G173000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47557467-47562466 Phaseolus vulgaris
Phvul.004G173000 10.0kb upstream 10.0kb upstream 13047 true Chr04: 47544420-47557466 Phaseolus vulgaris
Phvul.004G173000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47544420-47554419 Phaseolus vulgaris
Phvul.004G173000 10.0kb downstream 10.0kb downstream 13047 true Chr04: 47554420-47567466 Phaseolus vulgaris
Phvul.004G173000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47557467-47567466 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309390 5265 Fabidae View MSA
124071196 5270 Rosid View MSA
123751251 5271 Pentapetalae View MSA
122786571 5272 Eudicot View MSA
122048548 5273 Angiosperm View MSA
121350329 5274 Embryophyte View MSA
123426511 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.759 0.0 220.134 High High
cufflinks 36.5365 0.0 94.6783 High  
cufflinks 24.6507 0.0 63.78   Low
cufflinks 60.551 0.0 160.278 High  
cufflinks 39.6459 0.0 102.664 High  
cufflinks 17.2415 0.0 45.0961   Low
cufflinks 41.417 0.0 107.74 High  
cufflinks 42.5287 0.0 110.759 High  
cufflinks 40.0511 0.0 104.174 High  
cufflinks 84.0448 0.0 227.911 High High
cufflinks 50.6715 0.0 132.592 High  

0 Strain