Gene : Phvul.004G176700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10438:SF227 - THIOREDOXIN-LIKE 2-1, CHLOROPLASTIC-RELATED Genomic Order:  1810
Name:  ? Phvul.004G176700 Secondary Identifier:  ? PAC:37162268
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G176700 0.5kb upstream 0.5kb upstream 4880 true Chr04: 47925066-47929945 Phaseolus vulgaris
Phvul.004G176700 0.5kb upstream 0.5kb upstream 500 false Chr04: 47929446-47929945 Phaseolus vulgaris
Phvul.004G176700 0.5kb downstream 0.5kb downstream 4880 true Chr04: 47924566-47929445 Phaseolus vulgaris
Phvul.004G176700 0.5kb downstream 0.5kb downstream 500 false Chr04: 47924566-47925065 Phaseolus vulgaris
Phvul.004G176700 1.0kb upstream 1.0kb upstream 5380 true Chr04: 47925066-47930445 Phaseolus vulgaris
Phvul.004G176700 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47929446-47930445 Phaseolus vulgaris
Phvul.004G176700 1.0kb downstream 1.0kb downstream 5380 true Chr04: 47924066-47929445 Phaseolus vulgaris
Phvul.004G176700 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47924066-47925065 Phaseolus vulgaris
Phvul.004G176700 2.0kb upstream 2.0kb upstream 6380 true Chr04: 47925066-47931445 Phaseolus vulgaris
Phvul.004G176700 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47929446-47931445 Phaseolus vulgaris
Phvul.004G176700 2.0kb downstream 2.0kb downstream 6380 true Chr04: 47923066-47929445 Phaseolus vulgaris
Phvul.004G176700 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47923066-47925065 Phaseolus vulgaris
Phvul.004G176700 5.0kb upstream 5.0kb upstream 9380 true Chr04: 47925066-47934445 Phaseolus vulgaris
Phvul.004G176700 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47929446-47934445 Phaseolus vulgaris
Phvul.004G176700 5.0kb downstream 5.0kb downstream 9380 true Chr04: 47920066-47929445 Phaseolus vulgaris
Phvul.004G176700 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47920066-47925065 Phaseolus vulgaris
Phvul.004G176700 10.0kb upstream 10.0kb upstream 14380 true Chr04: 47925066-47939445 Phaseolus vulgaris
Phvul.004G176700 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47929446-47939445 Phaseolus vulgaris
Phvul.004G176700 10.0kb downstream 10.0kb downstream 14380 true Chr04: 47915066-47929445 Phaseolus vulgaris
Phvul.004G176700 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47915066-47925065 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306234 5265 Fabidae View MSA
124069337 5270 Rosid View MSA
123745414 5271 Pentapetalae View MSA
122792337 5272 Eudicot View MSA
122048222 5273 Angiosperm View MSA
121347781 5274 Embryophyte View MSA
123427936 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.1094 0.0 60.1154    
cufflinks 17.0579 0.0 47.5458    
cufflinks 107.511 0.0 281.155 High High
cufflinks 19.9469 0.0 54.5635    
cufflinks 22.2883 0.0 60.8609    
cufflinks 38.1923 0.0 100.043 High  
cufflinks 12.9088 0.0 36.9012    
cufflinks 13.8107 0.0 39.196    
cufflinks 14.6761 0.0 41.4942    
cufflinks 18.1235 0.0 50.3236    
cufflinks 23.2485 0.0 63.2843    

0 Strain