Gene : Phvul.004G178300 P. vulgaris v2.1
Defline:  (1 of 3) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Genomic Order:  1826
Name:  ? Phvul.004G178300 Secondary Identifier:  ? PAC:37162764
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-2541 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G178300 0.5kb upstream 0.5kb upstream 12200 true Chr04: 48013742-48025941 Phaseolus vulgaris
Phvul.004G178300 0.5kb upstream 0.5kb upstream 500 false Chr04: 48013742-48014241 Phaseolus vulgaris
Phvul.004G178300 0.5kb downstream 0.5kb downstream 12200 true Chr04: 48014242-48026441 Phaseolus vulgaris
Phvul.004G178300 0.5kb downstream 0.5kb downstream 500 false Chr04: 48025942-48026441 Phaseolus vulgaris
Phvul.004G178300 1.0kb upstream 1.0kb upstream 12700 true Chr04: 48013242-48025941 Phaseolus vulgaris
Phvul.004G178300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 48013242-48014241 Phaseolus vulgaris
Phvul.004G178300 1.0kb downstream 1.0kb downstream 12700 true Chr04: 48014242-48026941 Phaseolus vulgaris
Phvul.004G178300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 48025942-48026941 Phaseolus vulgaris
Phvul.004G178300 2.0kb upstream 2.0kb upstream 13700 true Chr04: 48012242-48025941 Phaseolus vulgaris
Phvul.004G178300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 48012242-48014241 Phaseolus vulgaris
Phvul.004G178300 2.0kb downstream 2.0kb downstream 13700 true Chr04: 48014242-48027941 Phaseolus vulgaris
Phvul.004G178300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 48025942-48027941 Phaseolus vulgaris
Phvul.004G178300 5.0kb upstream 5.0kb upstream 16700 true Chr04: 48009242-48025941 Phaseolus vulgaris
Phvul.004G178300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 48009242-48014241 Phaseolus vulgaris
Phvul.004G178300 5.0kb downstream 5.0kb downstream 16700 true Chr04: 48014242-48030941 Phaseolus vulgaris
Phvul.004G178300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 48025942-48030941 Phaseolus vulgaris
Phvul.004G178300 10.0kb upstream 10.0kb upstream 21700 true Chr04: 48004242-48025941 Phaseolus vulgaris
Phvul.004G178300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 48004242-48014241 Phaseolus vulgaris
Phvul.004G178300 10.0kb downstream 10.0kb downstream 21700 true Chr04: 48014242-48035941 Phaseolus vulgaris
Phvul.004G178300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 48025942-48035941 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305993 5265 Fabidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.5966 0.0 20.1024   Low
cufflinks 13.1261 0.0 33.9819    
cufflinks 19.1216 0.0 49.5223    
cufflinks 15.2881 0.0 39.5346    
cufflinks 14.8218 0.0 38.3285    
cufflinks 22.0464 0.0 57.2687    
cufflinks 18.8107 0.0 48.6948    
cufflinks 22.0685 0.0 57.4112    
cufflinks 22.7184 0.0 59.0347   High
cufflinks 18.5347 0.0 47.9637    
cufflinks 15.087 0.0 39.0088    

0 Strain