Gene : Phvul.007G125600 P. vulgaris v2.1
Defline:  (1 of 1) K10886 - DNA-repair protein XRCC4 (XRCC4) Genomic Order:  1183
Name:  ? Phvul.007G125600 Secondary Identifier:  ? PAC:37165926
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G125600 0.5kb upstream 0.5kb upstream 5108 true Chr07: 20145530-20150637 Phaseolus vulgaris
Phvul.007G125600 0.5kb upstream 0.5kb upstream 500 false Chr07: 20150138-20150637 Phaseolus vulgaris
Phvul.007G125600 0.5kb downstream 0.5kb downstream 5108 true Chr07: 20145030-20150137 Phaseolus vulgaris
Phvul.007G125600 0.5kb downstream 0.5kb downstream 500 false Chr07: 20145030-20145529 Phaseolus vulgaris
Phvul.007G125600 1.0kb upstream 1.0kb upstream 5608 true Chr07: 20145530-20151137 Phaseolus vulgaris
Phvul.007G125600 1.0kb upstream 1.0kb upstream 1000 false Chr07: 20150138-20151137 Phaseolus vulgaris
Phvul.007G125600 1.0kb downstream 1.0kb downstream 5608 true Chr07: 20144530-20150137 Phaseolus vulgaris
Phvul.007G125600 1.0kb downstream 1.0kb downstream 1000 false Chr07: 20144530-20145529 Phaseolus vulgaris
Phvul.007G125600 2.0kb upstream 2.0kb upstream 6608 true Chr07: 20145530-20152137 Phaseolus vulgaris
Phvul.007G125600 2.0kb upstream 2.0kb upstream 2000 false Chr07: 20150138-20152137 Phaseolus vulgaris
Phvul.007G125600 2.0kb downstream 2.0kb downstream 6608 true Chr07: 20143530-20150137 Phaseolus vulgaris
Phvul.007G125600 2.0kb downstream 2.0kb downstream 2000 false Chr07: 20143530-20145529 Phaseolus vulgaris
Phvul.007G125600 5.0kb upstream 5.0kb upstream 9608 true Chr07: 20145530-20155137 Phaseolus vulgaris
Phvul.007G125600 5.0kb upstream 5.0kb upstream 5000 false Chr07: 20150138-20155137 Phaseolus vulgaris
Phvul.007G125600 5.0kb downstream 5.0kb downstream 9608 true Chr07: 20140530-20150137 Phaseolus vulgaris
Phvul.007G125600 5.0kb downstream 5.0kb downstream 5000 false Chr07: 20140530-20145529 Phaseolus vulgaris
Phvul.007G125600 10.0kb upstream 10.0kb upstream 14608 true Chr07: 20145530-20160137 Phaseolus vulgaris
Phvul.007G125600 10.0kb upstream 10.0kb upstream 10000 false Chr07: 20150138-20160137 Phaseolus vulgaris
Phvul.007G125600 10.0kb downstream 10.0kb downstream 14608 true Chr07: 20135530-20150137 Phaseolus vulgaris
Phvul.007G125600 10.0kb downstream 10.0kb downstream 10000 false Chr07: 20135530-20145529 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300913 5265 Fabidae View MSA
124065515 5270 Rosid View MSA
123736915 5271 Pentapetalae View MSA
122786405 5272 Eudicot View MSA
122042130 5273 Angiosperm View MSA
121344133 5274 Embryophyte View MSA
123379982 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.26132 0.0 13.1164    
cufflinks 6.44109 0.0 18.8924   High
cufflinks 5.29651 0.0 15.8357    
cufflinks 3.80241 0.0 11.9438   Low
cufflinks 3.74877 0.0 11.7959   Low
cufflinks 5.6574 0.0 16.8307    
cufflinks 4.76664 0.0 14.4539    
cufflinks 5.57578 0.0 16.5555    
cufflinks 3.67142 0.0 11.4814   Low
cufflinks 4.88677 0.0 14.82    
cufflinks 5.08025 0.0 15.3603    

0 Strain