Gene : Phvul.007G101900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12565//PTHR12565:SF139 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1030
Name:  ? Phvul.007G101900 Secondary Identifier:  ? PAC:37165580
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G101900 0.5kb upstream 0.5kb upstream 3325 true Chr07: 11605699-11609023 Phaseolus vulgaris
Phvul.007G101900 0.5kb upstream 0.5kb upstream 500 false Chr07: 11605699-11606198 Phaseolus vulgaris
Phvul.007G101900 0.5kb downstream 0.5kb downstream 3325 true Chr07: 11606199-11609523 Phaseolus vulgaris
Phvul.007G101900 0.5kb downstream 0.5kb downstream 500 false Chr07: 11609024-11609523 Phaseolus vulgaris
Phvul.007G101900 1.0kb upstream 1.0kb upstream 3825 true Chr07: 11605199-11609023 Phaseolus vulgaris
Phvul.007G101900 1.0kb upstream 1.0kb upstream 1000 false Chr07: 11605199-11606198 Phaseolus vulgaris
Phvul.007G101900 1.0kb downstream 1.0kb downstream 3825 true Chr07: 11606199-11610023 Phaseolus vulgaris
Phvul.007G101900 1.0kb downstream 1.0kb downstream 1000 false Chr07: 11609024-11610023 Phaseolus vulgaris
Phvul.007G101900 2.0kb upstream 2.0kb upstream 4825 true Chr07: 11604199-11609023 Phaseolus vulgaris
Phvul.007G101900 2.0kb upstream 2.0kb upstream 2000 false Chr07: 11604199-11606198 Phaseolus vulgaris
Phvul.007G101900 2.0kb downstream 2.0kb downstream 4825 true Chr07: 11606199-11611023 Phaseolus vulgaris
Phvul.007G101900 2.0kb downstream 2.0kb downstream 2000 false Chr07: 11609024-11611023 Phaseolus vulgaris
Phvul.007G101900 5.0kb upstream 5.0kb upstream 7825 true Chr07: 11601199-11609023 Phaseolus vulgaris
Phvul.007G101900 5.0kb upstream 5.0kb upstream 5000 false Chr07: 11601199-11606198 Phaseolus vulgaris
Phvul.007G101900 5.0kb downstream 5.0kb downstream 7825 true Chr07: 11606199-11614023 Phaseolus vulgaris
Phvul.007G101900 5.0kb downstream 5.0kb downstream 5000 false Chr07: 11609024-11614023 Phaseolus vulgaris
Phvul.007G101900 10.0kb upstream 10.0kb upstream 12825 true Chr07: 11596199-11609023 Phaseolus vulgaris
Phvul.007G101900 10.0kb upstream 10.0kb upstream 10000 false Chr07: 11596199-11606198 Phaseolus vulgaris
Phvul.007G101900 10.0kb downstream 10.0kb downstream 12825 true Chr07: 11606199-11619023 Phaseolus vulgaris
Phvul.007G101900 10.0kb downstream 10.0kb downstream 10000 false Chr07: 11609024-11619023 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311698 5265 Fabidae View MSA
124065415 5270 Rosid View MSA
123749080 5271 Pentapetalae View MSA
122789211 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.61026 0.0 13.3392    
cufflinks 5.9355 0.0 16.7589    
cufflinks 9.02763 0.0 24.499    
cufflinks 8.04747 0.0 22.1986    
cufflinks 19.4849 0.0 50.6175    
cufflinks 15.9154 0.0 41.5882    
cufflinks 7.9053 0.0 21.6567    
cufflinks 2.47866 0.0 7.65929    
cufflinks 14.1681 0.0 37.2071    
cufflinks 0.242087 0.0 0.947623 Low Low
cufflinks 21.3351 0.0 55.291    

0 Strain