Gene : Phvul.004G157300 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31874:SF1 - CCT MOTIF FAMILY PROTEIN-RELATED Genomic Order:  1616
Name:  ? Phvul.004G157300 Secondary Identifier:  ? PAC:37163549
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G157300 0.5kb upstream 0.5kb upstream 4164 true Chr04: 46185294-46189457 Phaseolus vulgaris
Phvul.004G157300 0.5kb upstream 0.5kb upstream 500 false Chr04: 46188958-46189457 Phaseolus vulgaris
Phvul.004G157300 0.5kb downstream 0.5kb downstream 4164 true Chr04: 46184794-46188957 Phaseolus vulgaris
Phvul.004G157300 0.5kb downstream 0.5kb downstream 500 false Chr04: 46184794-46185293 Phaseolus vulgaris
Phvul.004G157300 1.0kb upstream 1.0kb upstream 4664 true Chr04: 46185294-46189957 Phaseolus vulgaris
Phvul.004G157300 1.0kb upstream 1.0kb upstream 1000 false Chr04: 46188958-46189957 Phaseolus vulgaris
Phvul.004G157300 1.0kb downstream 1.0kb downstream 4664 true Chr04: 46184294-46188957 Phaseolus vulgaris
Phvul.004G157300 1.0kb downstream 1.0kb downstream 1000 false Chr04: 46184294-46185293 Phaseolus vulgaris
Phvul.004G157300 2.0kb upstream 2.0kb upstream 5664 true Chr04: 46185294-46190957 Phaseolus vulgaris
Phvul.004G157300 2.0kb upstream 2.0kb upstream 2000 false Chr04: 46188958-46190957 Phaseolus vulgaris
Phvul.004G157300 2.0kb downstream 2.0kb downstream 5664 true Chr04: 46183294-46188957 Phaseolus vulgaris
Phvul.004G157300 2.0kb downstream 2.0kb downstream 2000 false Chr04: 46183294-46185293 Phaseolus vulgaris
Phvul.004G157300 5.0kb upstream 5.0kb upstream 8664 true Chr04: 46185294-46193957 Phaseolus vulgaris
Phvul.004G157300 5.0kb upstream 5.0kb upstream 5000 false Chr04: 46188958-46193957 Phaseolus vulgaris
Phvul.004G157300 5.0kb downstream 5.0kb downstream 8664 true Chr04: 46180294-46188957 Phaseolus vulgaris
Phvul.004G157300 5.0kb downstream 5.0kb downstream 5000 false Chr04: 46180294-46185293 Phaseolus vulgaris
Phvul.004G157300 10.0kb upstream 10.0kb upstream 13664 true Chr04: 46185294-46198957 Phaseolus vulgaris
Phvul.004G157300 10.0kb upstream 10.0kb upstream 10000 false Chr04: 46188958-46198957 Phaseolus vulgaris
Phvul.004G157300 10.0kb downstream 10.0kb downstream 13664 true Chr04: 46175294-46188957 Phaseolus vulgaris
Phvul.004G157300 10.0kb downstream 10.0kb downstream 10000 false Chr04: 46175294-46185293 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254320 5265 Fabidae View MSA
124061495 5270 Rosid View MSA
123743712 5271 Pentapetalae View MSA
122787534 5272 Eudicot View MSA
122046214 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121351074 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.303024 0.0 1.16309 Low  
cufflinks 4.77911 0.0 13.7973    
cufflinks 91.1708 0.0 253.671 High High
cufflinks 0.229027 0.0 0.905258 Low  
cufflinks 3.957 0.0 11.7644    
cufflinks 49.5151 0.0 130.416 High High
cufflinks 0.211107 0.0 0.833523 Low  
cufflinks 0.0309551 0.0 0.145309 Low Low
cufflinks 0.114079 0.0 0.473182 Low  
cufflinks 41.9027 0.0 109.213 High High
cufflinks 1.75265 0.0 5.69977    

0 Strain