Gene : Phvul.004G159100 P. vulgaris v2.1
Defline:  (1 of 3) K11450 - lysine-specific histone demethylase 1 [EC:1.-.-.-] (AOF2, LSD1) Genomic Order:  1633
Name:  ? Phvul.004G159100 Secondary Identifier:  ? PAC:37162507
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6441 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.004G159100 0.5kb upstream 0.5kb upstream 3244 true Chr04: 46313107-46316350 Phaseolus vulgaris
Phvul.004G159100 0.5kb upstream 0.5kb upstream 500 false Chr04: 46315851-46316350 Phaseolus vulgaris
Phvul.004G159100 0.5kb downstream 0.5kb downstream 3244 true Chr04: 46312607-46315850 Phaseolus vulgaris
Phvul.004G159100 0.5kb downstream 0.5kb downstream 500 false Chr04: 46312607-46313106 Phaseolus vulgaris
Phvul.004G159100 1.0kb upstream 1.0kb upstream 3744 true Chr04: 46313107-46316850 Phaseolus vulgaris
Phvul.004G159100 1.0kb upstream 1.0kb upstream 1000 false Chr04: 46315851-46316850 Phaseolus vulgaris
Phvul.004G159100 1.0kb downstream 1.0kb downstream 3744 true Chr04: 46312107-46315850 Phaseolus vulgaris
Phvul.004G159100 1.0kb downstream 1.0kb downstream 1000 false Chr04: 46312107-46313106 Phaseolus vulgaris
Phvul.004G159100 2.0kb upstream 2.0kb upstream 4744 true Chr04: 46313107-46317850 Phaseolus vulgaris
Phvul.004G159100 2.0kb upstream 2.0kb upstream 2000 false Chr04: 46315851-46317850 Phaseolus vulgaris
Phvul.004G159100 2.0kb downstream 2.0kb downstream 4744 true Chr04: 46311107-46315850 Phaseolus vulgaris
Phvul.004G159100 2.0kb downstream 2.0kb downstream 2000 false Chr04: 46311107-46313106 Phaseolus vulgaris
Phvul.004G159100 5.0kb upstream 5.0kb upstream 7744 true Chr04: 46313107-46320850 Phaseolus vulgaris
Phvul.004G159100 5.0kb upstream 5.0kb upstream 5000 false Chr04: 46315851-46320850 Phaseolus vulgaris
Phvul.004G159100 5.0kb downstream 5.0kb downstream 7744 true Chr04: 46308107-46315850 Phaseolus vulgaris
Phvul.004G159100 5.0kb downstream 5.0kb downstream 5000 false Chr04: 46308107-46313106 Phaseolus vulgaris
Phvul.004G159100 10.0kb upstream 10.0kb upstream 12744 true Chr04: 46313107-46325850 Phaseolus vulgaris
Phvul.004G159100 10.0kb upstream 10.0kb upstream 10000 false Chr04: 46315851-46325850 Phaseolus vulgaris
Phvul.004G159100 10.0kb downstream 10.0kb downstream 12744 true Chr04: 46303107-46315850 Phaseolus vulgaris
Phvul.004G159100 10.0kb downstream 10.0kb downstream 10000 false Chr04: 46303107-46313106 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300219 5265 Fabidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.21458 0.0 11.3752   Low
cufflinks 9.26619 0.0 24.0053   High
cufflinks 6.46728 0.0 17.0041    
cufflinks 7.68414 0.0 20.0757    
cufflinks 8.5125 0.0 22.0874    
cufflinks 7.17804 0.0 18.7489    
cufflinks 5.03481 0.0 13.3955   Low
cufflinks 6.53576 0.0 17.136    
cufflinks 6.20684 0.0 16.3436    
cufflinks 8.87853 0.0 23.0245    
cufflinks 8.74735 0.0 22.6829    

0 Strain