Gene : Phvul.005G106700 P. vulgaris v2.1
Defline:  (1 of 3) 2.8.1.8 - Lipoyl synthase / Lipoate synthase Genomic Order:  1063
Name:  ? Phvul.005G106700 Secondary Identifier:  ? PAC:37154484
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY0-501 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G106700 0.5kb upstream 0.5kb upstream 4493 true Chr05: 32716186-32720678 Phaseolus vulgaris
Phvul.005G106700 0.5kb upstream 0.5kb upstream 500 false Chr05: 32720179-32720678 Phaseolus vulgaris
Phvul.005G106700 0.5kb downstream 0.5kb downstream 4493 true Chr05: 32715686-32720178 Phaseolus vulgaris
Phvul.005G106700 0.5kb downstream 0.5kb downstream 500 false Chr05: 32715686-32716185 Phaseolus vulgaris
Phvul.005G106700 1.0kb upstream 1.0kb upstream 4993 true Chr05: 32716186-32721178 Phaseolus vulgaris
Phvul.005G106700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32720179-32721178 Phaseolus vulgaris
Phvul.005G106700 1.0kb downstream 1.0kb downstream 4993 true Chr05: 32715186-32720178 Phaseolus vulgaris
Phvul.005G106700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32715186-32716185 Phaseolus vulgaris
Phvul.005G106700 2.0kb upstream 2.0kb upstream 5993 true Chr05: 32716186-32722178 Phaseolus vulgaris
Phvul.005G106700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32720179-32722178 Phaseolus vulgaris
Phvul.005G106700 2.0kb downstream 2.0kb downstream 5993 true Chr05: 32714186-32720178 Phaseolus vulgaris
Phvul.005G106700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32714186-32716185 Phaseolus vulgaris
Phvul.005G106700 5.0kb upstream 5.0kb upstream 8993 true Chr05: 32716186-32725178 Phaseolus vulgaris
Phvul.005G106700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32720179-32725178 Phaseolus vulgaris
Phvul.005G106700 5.0kb downstream 5.0kb downstream 8993 true Chr05: 32711186-32720178 Phaseolus vulgaris
Phvul.005G106700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32711186-32716185 Phaseolus vulgaris
Phvul.005G106700 10.0kb upstream 10.0kb upstream 13993 true Chr05: 32716186-32730178 Phaseolus vulgaris
Phvul.005G106700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32720179-32730178 Phaseolus vulgaris
Phvul.005G106700 10.0kb downstream 10.0kb downstream 13993 true Chr05: 32706186-32720178 Phaseolus vulgaris
Phvul.005G106700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32706186-32716185 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122251771 5265 Fabidae Singleton cluster - no MSA
124060481 5270 Rosid View MSA
123740164 5271 Pentapetalae View MSA
122788424 5272 Eudicot View MSA
122045804 5273 Angiosperm View MSA
121345971 5274 Embryophyte View MSA
123424868 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.6307 0.0 52.6898    
cufflinks 10.9207 0.0 40.2923    
cufflinks 42.086 0.0 140.09 High High
cufflinks 17.7672 0.0 50.4854    
cufflinks 15.5397 0.0 44.6639    
cufflinks 20.7134 0.0 69.4595    
cufflinks 10.1705 0.0 31.0938    
cufflinks 7.67807 0.0 30.1867   Low
cufflinks 10.1379 0.0 30.8906    
cufflinks 10.4747 0.0 38.4153    
cufflinks 16.6083 0.0 47.2646    

0 Strain