Gene : Phvul.005G106500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31901:SF10 - AUXIN-RESPONSIVE GH3 FAMILY PROTEIN Genomic Order:  1061
Name:  ? Phvul.005G106500 Secondary Identifier:  ? PAC:37154044
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G106500 0.5kb upstream 0.5kb upstream 4783 true Chr05: 32676655-32681437 Phaseolus vulgaris
Phvul.005G106500 0.5kb upstream 0.5kb upstream 500 false Chr05: 32676655-32677154 Phaseolus vulgaris
Phvul.005G106500 0.5kb downstream 0.5kb downstream 4783 true Chr05: 32677155-32681937 Phaseolus vulgaris
Phvul.005G106500 0.5kb downstream 0.5kb downstream 500 false Chr05: 32681438-32681937 Phaseolus vulgaris
Phvul.005G106500 1.0kb upstream 1.0kb upstream 5283 true Chr05: 32676155-32681437 Phaseolus vulgaris
Phvul.005G106500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 32676155-32677154 Phaseolus vulgaris
Phvul.005G106500 1.0kb downstream 1.0kb downstream 5283 true Chr05: 32677155-32682437 Phaseolus vulgaris
Phvul.005G106500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 32681438-32682437 Phaseolus vulgaris
Phvul.005G106500 2.0kb upstream 2.0kb upstream 6283 true Chr05: 32675155-32681437 Phaseolus vulgaris
Phvul.005G106500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 32675155-32677154 Phaseolus vulgaris
Phvul.005G106500 2.0kb downstream 2.0kb downstream 6283 true Chr05: 32677155-32683437 Phaseolus vulgaris
Phvul.005G106500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 32681438-32683437 Phaseolus vulgaris
Phvul.005G106500 5.0kb upstream 5.0kb upstream 9283 true Chr05: 32672155-32681437 Phaseolus vulgaris
Phvul.005G106500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 32672155-32677154 Phaseolus vulgaris
Phvul.005G106500 5.0kb downstream 5.0kb downstream 9283 true Chr05: 32677155-32686437 Phaseolus vulgaris
Phvul.005G106500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 32681438-32686437 Phaseolus vulgaris
Phvul.005G106500 10.0kb upstream 10.0kb upstream 14283 true Chr05: 32667155-32681437 Phaseolus vulgaris
Phvul.005G106500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 32667155-32677154 Phaseolus vulgaris
Phvul.005G106500 10.0kb downstream 10.0kb downstream 14283 true Chr05: 32677155-32691437 Phaseolus vulgaris
Phvul.005G106500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 32681438-32691437 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255078 5265 Fabidae View MSA
124061485 5270 Rosid View MSA
123750974 5271 Pentapetalae View MSA
122788178 5272 Eudicot View MSA
122044155 5273 Angiosperm View MSA
121349637 5274 Embryophyte View MSA
123381383 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.26875 0.0 14.2724   High
cufflinks 2.71655 0.0 10.1575    
cufflinks 1.47877 0.0 6.40242    
cufflinks 5.19155 0.0 17.0557   High
cufflinks 0.369086 0.0 2.3156 Low  
cufflinks 2.91414 0.0 10.6929    
cufflinks 0.245339 0.0 1.15168 Low Low
cufflinks 0.347635 0.0 1.58794 Low  
cufflinks 0.136595 0.0 0.547305 Low Low
cufflinks 1.63143 0.0 7.55113    
cufflinks 1.13012 0.0 5.53606    

0 Strain