Gene : Phvul.007G239100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR15141:SF40 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED Genomic Order:  2246
Name:  ? Phvul.007G239100 Secondary Identifier:  ? PAC:37165881
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G239100 0.5kb upstream 0.5kb upstream 7651 true Chr07: 36299637-36307287 Phaseolus vulgaris
Phvul.007G239100 0.5kb upstream 0.5kb upstream 500 false Chr07: 36306788-36307287 Phaseolus vulgaris
Phvul.007G239100 0.5kb downstream 0.5kb downstream 7651 true Chr07: 36299137-36306787 Phaseolus vulgaris
Phvul.007G239100 0.5kb downstream 0.5kb downstream 500 false Chr07: 36299137-36299636 Phaseolus vulgaris
Phvul.007G239100 1.0kb upstream 1.0kb upstream 8151 true Chr07: 36299637-36307787 Phaseolus vulgaris
Phvul.007G239100 1.0kb upstream 1.0kb upstream 1000 false Chr07: 36306788-36307787 Phaseolus vulgaris
Phvul.007G239100 1.0kb downstream 1.0kb downstream 8151 true Chr07: 36298637-36306787 Phaseolus vulgaris
Phvul.007G239100 1.0kb downstream 1.0kb downstream 1000 false Chr07: 36298637-36299636 Phaseolus vulgaris
Phvul.007G239100 2.0kb upstream 2.0kb upstream 9151 true Chr07: 36299637-36308787 Phaseolus vulgaris
Phvul.007G239100 2.0kb upstream 2.0kb upstream 2000 false Chr07: 36306788-36308787 Phaseolus vulgaris
Phvul.007G239100 2.0kb downstream 2.0kb downstream 9151 true Chr07: 36297637-36306787 Phaseolus vulgaris
Phvul.007G239100 2.0kb downstream 2.0kb downstream 2000 false Chr07: 36297637-36299636 Phaseolus vulgaris
Phvul.007G239100 5.0kb upstream 5.0kb upstream 12151 true Chr07: 36299637-36311787 Phaseolus vulgaris
Phvul.007G239100 5.0kb upstream 5.0kb upstream 5000 false Chr07: 36306788-36311787 Phaseolus vulgaris
Phvul.007G239100 5.0kb downstream 5.0kb downstream 12151 true Chr07: 36294637-36306787 Phaseolus vulgaris
Phvul.007G239100 5.0kb downstream 5.0kb downstream 5000 false Chr07: 36294637-36299636 Phaseolus vulgaris
Phvul.007G239100 10.0kb upstream 10.0kb upstream 17151 true Chr07: 36299637-36316787 Phaseolus vulgaris
Phvul.007G239100 10.0kb upstream 10.0kb upstream 10000 false Chr07: 36306788-36316787 Phaseolus vulgaris
Phvul.007G239100 10.0kb downstream 10.0kb downstream 17151 true Chr07: 36289637-36306787 Phaseolus vulgaris
Phvul.007G239100 10.0kb downstream 10.0kb downstream 10000 false Chr07: 36289637-36299636 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299503 5265 Fabidae View MSA
124062245 5270 Rosid View MSA
123747167 5271 Pentapetalae View MSA
122796041 5272 Eudicot View MSA
122045393 5273 Angiosperm View MSA
121348214 5274 Embryophyte View MSA
123380774 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.59971 0.0 25.3083    
cufflinks 5.38241 0.0 14.8641   Low
cufflinks 11.4294 0.0 29.8726    
cufflinks 8.49212 0.0 22.7368    
cufflinks 9.09802 0.0 24.1808    
cufflinks 7.27359 0.0 19.5692   Low
cufflinks 12.3674 0.0 32.1799    
cufflinks 11.6208 0.0 30.2961    
cufflinks 14.6858 0.0 38.0487   High
cufflinks 12.0534 0.0 31.4332    
cufflinks 9.35475 0.0 24.7698    

0 Strain