Gene : Phvul.005G083500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12736//PTHR12736:SF13 - LANC-LIKE PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  835
Name:  ? Phvul.005G083500 Secondary Identifier:  ? PAC:37153960
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G083500 0.5kb upstream 0.5kb upstream 8588 true Chr05: 21781059-21789646 Phaseolus vulgaris
Phvul.005G083500 0.5kb upstream 0.5kb upstream 500 false Chr05: 21781059-21781558 Phaseolus vulgaris
Phvul.005G083500 0.5kb downstream 0.5kb downstream 8588 true Chr05: 21781559-21790146 Phaseolus vulgaris
Phvul.005G083500 0.5kb downstream 0.5kb downstream 500 false Chr05: 21789647-21790146 Phaseolus vulgaris
Phvul.005G083500 1.0kb upstream 1.0kb upstream 9088 true Chr05: 21780559-21789646 Phaseolus vulgaris
Phvul.005G083500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 21780559-21781558 Phaseolus vulgaris
Phvul.005G083500 1.0kb downstream 1.0kb downstream 9088 true Chr05: 21781559-21790646 Phaseolus vulgaris
Phvul.005G083500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 21789647-21790646 Phaseolus vulgaris
Phvul.005G083500 2.0kb upstream 2.0kb upstream 10088 true Chr05: 21779559-21789646 Phaseolus vulgaris
Phvul.005G083500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 21779559-21781558 Phaseolus vulgaris
Phvul.005G083500 2.0kb downstream 2.0kb downstream 10088 true Chr05: 21781559-21791646 Phaseolus vulgaris
Phvul.005G083500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 21789647-21791646 Phaseolus vulgaris
Phvul.005G083500 5.0kb upstream 5.0kb upstream 13088 true Chr05: 21776559-21789646 Phaseolus vulgaris
Phvul.005G083500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 21776559-21781558 Phaseolus vulgaris
Phvul.005G083500 5.0kb downstream 5.0kb downstream 13088 true Chr05: 21781559-21794646 Phaseolus vulgaris
Phvul.005G083500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 21789647-21794646 Phaseolus vulgaris
Phvul.005G083500 10.0kb upstream 10.0kb upstream 18088 true Chr05: 21771559-21789646 Phaseolus vulgaris
Phvul.005G083500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 21771559-21781558 Phaseolus vulgaris
Phvul.005G083500 10.0kb downstream 10.0kb downstream 18088 true Chr05: 21781559-21799646 Phaseolus vulgaris
Phvul.005G083500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 21789647-21799646 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304685 5265 Fabidae View MSA
124065113 5270 Rosid View MSA
123737530 5271 Pentapetalae View MSA
122788012 5272 Eudicot View MSA
122042680 5273 Angiosperm View MSA
121348546 5274 Embryophyte View MSA
123425935 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.31611 0.0 818.643    
cufflinks 7.25789 0.0 103.367    
cufflinks 6.55366 0.0 33.5022    
cufflinks 6.93802 0.0 61.7118    
cufflinks 6.10307 0.0 74.4153    
cufflinks 3.70107 0.0 20.1493   Low
cufflinks 4.58648 0.0 62.3565    
cufflinks 4.60497 0.0 91.0843    
cufflinks 3.44793 0.0 65.9147   Low
cufflinks 11.0278 0.0 263.244   High
cufflinks 6.7908 0.0 55.5906    

0 Strain