Gene : Phvul.005G087700 P. vulgaris v2.1
Defline:  (1 of 1) K15429 - tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] (TRM5, TRMT5) Genomic Order:  902
Name:  ? Phvul.005G087700 Secondary Identifier:  ? PAC:37153503
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-6829 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7283 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7286 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G087700 0.5kb upstream 0.5kb upstream 14485 true Chr05: 26809585-26824069 Phaseolus vulgaris
Phvul.005G087700 0.5kb upstream 0.5kb upstream 500 false Chr05: 26823570-26824069 Phaseolus vulgaris
Phvul.005G087700 0.5kb downstream 0.5kb downstream 14485 true Chr05: 26809085-26823569 Phaseolus vulgaris
Phvul.005G087700 0.5kb downstream 0.5kb downstream 500 false Chr05: 26809085-26809584 Phaseolus vulgaris
Phvul.005G087700 1.0kb upstream 1.0kb upstream 14985 true Chr05: 26809585-26824569 Phaseolus vulgaris
Phvul.005G087700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 26823570-26824569 Phaseolus vulgaris
Phvul.005G087700 1.0kb downstream 1.0kb downstream 14985 true Chr05: 26808585-26823569 Phaseolus vulgaris
Phvul.005G087700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 26808585-26809584 Phaseolus vulgaris
Phvul.005G087700 2.0kb upstream 2.0kb upstream 15985 true Chr05: 26809585-26825569 Phaseolus vulgaris
Phvul.005G087700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 26823570-26825569 Phaseolus vulgaris
Phvul.005G087700 2.0kb downstream 2.0kb downstream 15985 true Chr05: 26807585-26823569 Phaseolus vulgaris
Phvul.005G087700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 26807585-26809584 Phaseolus vulgaris
Phvul.005G087700 5.0kb upstream 5.0kb upstream 18985 true Chr05: 26809585-26828569 Phaseolus vulgaris
Phvul.005G087700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 26823570-26828569 Phaseolus vulgaris
Phvul.005G087700 5.0kb downstream 5.0kb downstream 18985 true Chr05: 26804585-26823569 Phaseolus vulgaris
Phvul.005G087700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 26804585-26809584 Phaseolus vulgaris
Phvul.005G087700 10.0kb upstream 10.0kb upstream 23985 true Chr05: 26809585-26833569 Phaseolus vulgaris
Phvul.005G087700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 26823570-26833569 Phaseolus vulgaris
Phvul.005G087700 10.0kb downstream 10.0kb downstream 23985 true Chr05: 26799585-26823569 Phaseolus vulgaris
Phvul.005G087700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 26799585-26809584 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313848 5265 Fabidae View MSA
124065435 5270 Rosid View MSA
123747956 5271 Pentapetalae View MSA
122788813 5272 Eudicot View MSA
122045692 5273 Angiosperm View MSA
121347346 5274 Embryophyte View MSA
123426085 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.88302 0.0 28.3059    
cufflinks 8.04339 0.0 27.939    
cufflinks 16.1269 0.0 52.8217   High
cufflinks 8.50313 0.0 29.3827    
cufflinks 6.29423 0.0 22.9391    
cufflinks 11.2894 0.0 42.5731   High
cufflinks 5.5327 0.0 23.2897    
cufflinks 4.73974 0.0 18.3835   Low
cufflinks 5.15248 0.0 20.1008   Low
cufflinks 8.48161 0.0 33.0243    
cufflinks 7.05441 0.0 28.3675    

0 Strain