Gene : Phvul.005G081100 P. vulgaris v2.1
Defline:  (1 of 3) K10956 - protein transport protein SEC61 subunit alpha (SEC61A) Genomic Order:  804
Name:  ? Phvul.005G081100 Secondary Identifier:  ? PAC:37152497
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G081100 0.5kb upstream 0.5kb upstream 4244 true Chr05: 20158125-20162368 Phaseolus vulgaris
Phvul.005G081100 0.5kb upstream 0.5kb upstream 500 false Chr05: 20161869-20162368 Phaseolus vulgaris
Phvul.005G081100 0.5kb downstream 0.5kb downstream 4244 true Chr05: 20157625-20161868 Phaseolus vulgaris
Phvul.005G081100 0.5kb downstream 0.5kb downstream 500 false Chr05: 20157625-20158124 Phaseolus vulgaris
Phvul.005G081100 1.0kb upstream 1.0kb upstream 4744 true Chr05: 20158125-20162868 Phaseolus vulgaris
Phvul.005G081100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 20161869-20162868 Phaseolus vulgaris
Phvul.005G081100 1.0kb downstream 1.0kb downstream 4744 true Chr05: 20157125-20161868 Phaseolus vulgaris
Phvul.005G081100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 20157125-20158124 Phaseolus vulgaris
Phvul.005G081100 2.0kb upstream 2.0kb upstream 5744 true Chr05: 20158125-20163868 Phaseolus vulgaris
Phvul.005G081100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 20161869-20163868 Phaseolus vulgaris
Phvul.005G081100 2.0kb downstream 2.0kb downstream 5744 true Chr05: 20156125-20161868 Phaseolus vulgaris
Phvul.005G081100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 20156125-20158124 Phaseolus vulgaris
Phvul.005G081100 5.0kb upstream 5.0kb upstream 8744 true Chr05: 20158125-20166868 Phaseolus vulgaris
Phvul.005G081100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 20161869-20166868 Phaseolus vulgaris
Phvul.005G081100 5.0kb downstream 5.0kb downstream 8744 true Chr05: 20153125-20161868 Phaseolus vulgaris
Phvul.005G081100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 20153125-20158124 Phaseolus vulgaris
Phvul.005G081100 10.0kb upstream 10.0kb upstream 13744 true Chr05: 20158125-20171868 Phaseolus vulgaris
Phvul.005G081100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 20161869-20171868 Phaseolus vulgaris
Phvul.005G081100 10.0kb downstream 10.0kb downstream 13744 true Chr05: 20148125-20161868 Phaseolus vulgaris
Phvul.005G081100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 20148125-20158124 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303091 5265 Fabidae View MSA
124061120 5270 Rosid View MSA
123743159 5271 Pentapetalae View MSA
122792380 5272 Eudicot View MSA
122043956 5273 Angiosperm View MSA
121349680 5274 Embryophyte View MSA
123426638 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 103.494 0.0 290.316 High  
cufflinks 139.577 0.0 406.571 High  
cufflinks 109.522 0.0 309.663 High  
cufflinks 175.975 0.0 525.227 High High
cufflinks 107.043 0.0 300.204 High  
cufflinks 121.735 0.0 348.637 High  
cufflinks 91.3908 0.0 253.029 High Low
cufflinks 102.53 0.0 288.766 High  
cufflinks 116.402 0.0 329.866 High  
cufflinks 84.6901 0.0 232.838 High Low
cufflinks 138.563 0.0 401.161 High  

0 Strain