Gene : Phvul.007G208700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  1944
Name:  ? Phvul.007G208700 Secondary Identifier:  ? PAC:37167154
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CHLOROPHYLL-SYN Phaseolus vulgaris pathologic  
Pvulgaris HEME-BIOSYNTHESIS-II Phaseolus vulgaris pathologic  
Pvulgaris PWY-5918 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G208700 0.5kb upstream 0.5kb upstream 5451 true Chr07: 33098029-33103479 Phaseolus vulgaris
Phvul.007G208700 0.5kb upstream 0.5kb upstream 500 false Chr07: 33098029-33098528 Phaseolus vulgaris
Phvul.007G208700 0.5kb downstream 0.5kb downstream 5451 true Chr07: 33098529-33103979 Phaseolus vulgaris
Phvul.007G208700 0.5kb downstream 0.5kb downstream 500 false Chr07: 33103480-33103979 Phaseolus vulgaris
Phvul.007G208700 1.0kb upstream 1.0kb upstream 5951 true Chr07: 33097529-33103479 Phaseolus vulgaris
Phvul.007G208700 1.0kb upstream 1.0kb upstream 1000 false Chr07: 33097529-33098528 Phaseolus vulgaris
Phvul.007G208700 1.0kb downstream 1.0kb downstream 5951 true Chr07: 33098529-33104479 Phaseolus vulgaris
Phvul.007G208700 1.0kb downstream 1.0kb downstream 1000 false Chr07: 33103480-33104479 Phaseolus vulgaris
Phvul.007G208700 2.0kb upstream 2.0kb upstream 6951 true Chr07: 33096529-33103479 Phaseolus vulgaris
Phvul.007G208700 2.0kb upstream 2.0kb upstream 2000 false Chr07: 33096529-33098528 Phaseolus vulgaris
Phvul.007G208700 2.0kb downstream 2.0kb downstream 6951 true Chr07: 33098529-33105479 Phaseolus vulgaris
Phvul.007G208700 2.0kb downstream 2.0kb downstream 2000 false Chr07: 33103480-33105479 Phaseolus vulgaris
Phvul.007G208700 5.0kb upstream 5.0kb upstream 9951 true Chr07: 33093529-33103479 Phaseolus vulgaris
Phvul.007G208700 5.0kb upstream 5.0kb upstream 5000 false Chr07: 33093529-33098528 Phaseolus vulgaris
Phvul.007G208700 5.0kb downstream 5.0kb downstream 9951 true Chr07: 33098529-33108479 Phaseolus vulgaris
Phvul.007G208700 5.0kb downstream 5.0kb downstream 5000 false Chr07: 33103480-33108479 Phaseolus vulgaris
Phvul.007G208700 10.0kb upstream 10.0kb upstream 14951 true Chr07: 33088529-33103479 Phaseolus vulgaris
Phvul.007G208700 10.0kb upstream 10.0kb upstream 10000 false Chr07: 33088529-33098528 Phaseolus vulgaris
Phvul.007G208700 10.0kb downstream 10.0kb downstream 14951 true Chr07: 33098529-33113479 Phaseolus vulgaris
Phvul.007G208700 10.0kb downstream 10.0kb downstream 10000 false Chr07: 33103480-33113479 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305457 5265 Fabidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.8443 0.0 61.7273    
cufflinks 28.9919 0.0 75.3523    
cufflinks 100.425 0.0 289.955 High High
cufflinks 30.0215 0.0 78.0918    
cufflinks 25.0023 0.0 64.7659    
cufflinks 86.4904 0.0 245.138 High High
cufflinks 11.7418 0.0 30.7126   Low
cufflinks 25.2236 0.0 65.4003    
cufflinks 10.591 0.0 27.9214   Low
cufflinks 22.0535 0.0 57.0186    
cufflinks 23.2041 0.0 60.027    

0 Strain