Gene : Phvul.005G059600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13068//PTHR13068:SF22 - CGI-12 PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  590
Name:  ? Phvul.005G059600 Secondary Identifier:  ? PAC:37154002
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G059600 0.5kb upstream 0.5kb upstream 5188 true Chr05: 8337487-8342674 Phaseolus vulgaris
Phvul.005G059600 0.5kb upstream 0.5kb upstream 500 false Chr05: 8337487-8337986 Phaseolus vulgaris
Phvul.005G059600 0.5kb downstream 0.5kb downstream 5188 true Chr05: 8337987-8343174 Phaseolus vulgaris
Phvul.005G059600 0.5kb downstream 0.5kb downstream 500 false Chr05: 8342675-8343174 Phaseolus vulgaris
Phvul.005G059600 1.0kb upstream 1.0kb upstream 5688 true Chr05: 8336987-8342674 Phaseolus vulgaris
Phvul.005G059600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 8336987-8337986 Phaseolus vulgaris
Phvul.005G059600 1.0kb downstream 1.0kb downstream 5688 true Chr05: 8337987-8343674 Phaseolus vulgaris
Phvul.005G059600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 8342675-8343674 Phaseolus vulgaris
Phvul.005G059600 2.0kb upstream 2.0kb upstream 6688 true Chr05: 8335987-8342674 Phaseolus vulgaris
Phvul.005G059600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 8335987-8337986 Phaseolus vulgaris
Phvul.005G059600 2.0kb downstream 2.0kb downstream 6688 true Chr05: 8337987-8344674 Phaseolus vulgaris
Phvul.005G059600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 8342675-8344674 Phaseolus vulgaris
Phvul.005G059600 5.0kb upstream 5.0kb upstream 9688 true Chr05: 8332987-8342674 Phaseolus vulgaris
Phvul.005G059600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 8332987-8337986 Phaseolus vulgaris
Phvul.005G059600 5.0kb downstream 5.0kb downstream 9688 true Chr05: 8337987-8347674 Phaseolus vulgaris
Phvul.005G059600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 8342675-8347674 Phaseolus vulgaris
Phvul.005G059600 10.0kb upstream 10.0kb upstream 14688 true Chr05: 8327987-8342674 Phaseolus vulgaris
Phvul.005G059600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 8327987-8337986 Phaseolus vulgaris
Phvul.005G059600 10.0kb downstream 10.0kb downstream 14688 true Chr05: 8337987-8352674 Phaseolus vulgaris
Phvul.005G059600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 8342675-8352674 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305057 5265 Fabidae View MSA
124067504 5270 Rosid View MSA
123741152 5271 Pentapetalae View MSA
122793489 5272 Eudicot View MSA
122047592 5273 Angiosperm View MSA
121347961 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.40496 0.0 26.9243    
cufflinks 7.05988 0.0 20.921    
cufflinks 41.6146 0.0 107.637 High High
cufflinks 4.34916 0.0 13.5917    
cufflinks 8.7521 0.0 25.3781    
cufflinks 13.2353 0.0 36.7828    
cufflinks 1.00234 0.0 3.67518   Low
cufflinks 1.33962 0.0 4.76298   Low
cufflinks 0.986268 0.0 3.63272   Low
cufflinks 4.72658 0.0 14.6558    
cufflinks 4.88203 0.0 15.1571    

0 Strain