Gene : Phvul.005G060100 P. vulgaris v2.1
Defline:  (1 of 1) K12158 - ubiquitin-like protein Nedd8 (NEDD8) Genomic Order:  595
Name:  ? Phvul.005G060100 Secondary Identifier:  ? PAC:37152479
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G060100 0.5kb upstream 0.5kb upstream 5651 true Chr05: 8507355-8513005 Phaseolus vulgaris
Phvul.005G060100 0.5kb upstream 0.5kb upstream 500 false Chr05: 8512506-8513005 Phaseolus vulgaris
Phvul.005G060100 0.5kb downstream 0.5kb downstream 5651 true Chr05: 8506855-8512505 Phaseolus vulgaris
Phvul.005G060100 0.5kb downstream 0.5kb downstream 500 false Chr05: 8506855-8507354 Phaseolus vulgaris
Phvul.005G060100 1.0kb upstream 1.0kb upstream 6151 true Chr05: 8507355-8513505 Phaseolus vulgaris
Phvul.005G060100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 8512506-8513505 Phaseolus vulgaris
Phvul.005G060100 1.0kb downstream 1.0kb downstream 6151 true Chr05: 8506355-8512505 Phaseolus vulgaris
Phvul.005G060100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 8506355-8507354 Phaseolus vulgaris
Phvul.005G060100 2.0kb upstream 2.0kb upstream 7151 true Chr05: 8507355-8514505 Phaseolus vulgaris
Phvul.005G060100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 8512506-8514505 Phaseolus vulgaris
Phvul.005G060100 2.0kb downstream 2.0kb downstream 7151 true Chr05: 8505355-8512505 Phaseolus vulgaris
Phvul.005G060100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 8505355-8507354 Phaseolus vulgaris
Phvul.005G060100 5.0kb upstream 5.0kb upstream 10151 true Chr05: 8507355-8517505 Phaseolus vulgaris
Phvul.005G060100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 8512506-8517505 Phaseolus vulgaris
Phvul.005G060100 5.0kb downstream 5.0kb downstream 10151 true Chr05: 8502355-8512505 Phaseolus vulgaris
Phvul.005G060100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 8502355-8507354 Phaseolus vulgaris
Phvul.005G060100 10.0kb upstream 10.0kb upstream 15151 true Chr05: 8507355-8522505 Phaseolus vulgaris
Phvul.005G060100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 8512506-8522505 Phaseolus vulgaris
Phvul.005G060100 10.0kb downstream 10.0kb downstream 15151 true Chr05: 8497355-8512505 Phaseolus vulgaris
Phvul.005G060100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 8497355-8507354 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029747 5273 Angiosperm View MSA
122314148 5265 Fabidae View MSA
124062701 5270 Rosid View MSA
123752540 5271 Pentapetalae View MSA
122796500 5272 Eudicot View MSA
121351277 5274 Embryophyte View MSA
123428084 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 200.163 0.0 641.021 High High
cufflinks 103.263 0.0 437.177 High  
cufflinks 81.9593 0.0 341.717 High  
cufflinks 175.714 0.0 800.212 High High
cufflinks 95.5468 0.0 268.316 High  
cufflinks 64.5304 0.0 255.692 High Low
cufflinks 64.8807 0.0 276.05 High Low
cufflinks 68.4494 0.0 308.871 High  
cufflinks 80.1251 0.0 223.698 High  
cufflinks 99.8937 0.0 411.191 High  
cufflinks 134.318 0.0 613.64 High  

0 Strain