Gene : Phvul.005G067800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11088:SF31 - TRNA DIMETHYLALLYLTRANSFERASE 9 Genomic Order:  675
Name:  ? Phvul.005G067800 Secondary Identifier:  ? PAC:37153619
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-2781 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G067800 0.5kb upstream 0.5kb upstream 6811 true Chr05: 11562723-11569533 Phaseolus vulgaris
Phvul.005G067800 0.5kb upstream 0.5kb upstream 500 false Chr05: 11562723-11563222 Phaseolus vulgaris
Phvul.005G067800 0.5kb downstream 0.5kb downstream 6811 true Chr05: 11563223-11570033 Phaseolus vulgaris
Phvul.005G067800 0.5kb downstream 0.5kb downstream 500 false Chr05: 11569534-11570033 Phaseolus vulgaris
Phvul.005G067800 1.0kb upstream 1.0kb upstream 7311 true Chr05: 11562223-11569533 Phaseolus vulgaris
Phvul.005G067800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 11562223-11563222 Phaseolus vulgaris
Phvul.005G067800 1.0kb downstream 1.0kb downstream 7311 true Chr05: 11563223-11570533 Phaseolus vulgaris
Phvul.005G067800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 11569534-11570533 Phaseolus vulgaris
Phvul.005G067800 2.0kb upstream 2.0kb upstream 8311 true Chr05: 11561223-11569533 Phaseolus vulgaris
Phvul.005G067800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 11561223-11563222 Phaseolus vulgaris
Phvul.005G067800 2.0kb downstream 2.0kb downstream 8311 true Chr05: 11563223-11571533 Phaseolus vulgaris
Phvul.005G067800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 11569534-11571533 Phaseolus vulgaris
Phvul.005G067800 5.0kb upstream 5.0kb upstream 11311 true Chr05: 11558223-11569533 Phaseolus vulgaris
Phvul.005G067800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 11558223-11563222 Phaseolus vulgaris
Phvul.005G067800 5.0kb downstream 5.0kb downstream 11311 true Chr05: 11563223-11574533 Phaseolus vulgaris
Phvul.005G067800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 11569534-11574533 Phaseolus vulgaris
Phvul.005G067800 10.0kb upstream 10.0kb upstream 16311 true Chr05: 11553223-11569533 Phaseolus vulgaris
Phvul.005G067800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 11553223-11563222 Phaseolus vulgaris
Phvul.005G067800 10.0kb downstream 10.0kb downstream 16311 true Chr05: 11563223-11579533 Phaseolus vulgaris
Phvul.005G067800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 11569534-11579533 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302885 5265 Fabidae View MSA
124066214 5270 Rosid View MSA
123738978 5271 Pentapetalae View MSA
122792264 5272 Eudicot View MSA
122047791 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.99841 0.0 9.94155   Low
cufflinks 3.03199 0.0 13.1857    
cufflinks 4.90153 0.0 19.2129   High
cufflinks 2.39894 0.0 10.9247    
cufflinks 2.35215 0.0 10.942    
cufflinks 4.88655 0.0 18.9494   High
cufflinks 2.10872 0.0 10.136    
cufflinks 3.99012 0.0 16.0889    
cufflinks 2.37988 0.0 11.2589    
cufflinks 3.85824 0.0 15.7856    
cufflinks 2.15482 0.0 10.2791    

0 Strain