Gene : Phvul.005G051600 P. vulgaris v2.1
Defline:  (1 of 3) K09840 - 9-cis-epoxycarotenoid dioxygenase (NCED) Genomic Order:  510
Name:  ? Phvul.005G051600 Secondary Identifier:  ? PAC:37152745
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-695 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G051600 0.5kb upstream 0.5kb upstream 2868 true Chr05: 6596254-6599121 Phaseolus vulgaris
Phvul.005G051600 0.5kb upstream 0.5kb upstream 500 false Chr05: 6596254-6596753 Phaseolus vulgaris
Phvul.005G051600 0.5kb downstream 0.5kb downstream 2868 true Chr05: 6596754-6599621 Phaseolus vulgaris
Phvul.005G051600 0.5kb downstream 0.5kb downstream 500 false Chr05: 6599122-6599621 Phaseolus vulgaris
Phvul.005G051600 1.0kb upstream 1.0kb upstream 3368 true Chr05: 6595754-6599121 Phaseolus vulgaris
Phvul.005G051600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 6595754-6596753 Phaseolus vulgaris
Phvul.005G051600 1.0kb downstream 1.0kb downstream 3368 true Chr05: 6596754-6600121 Phaseolus vulgaris
Phvul.005G051600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 6599122-6600121 Phaseolus vulgaris
Phvul.005G051600 2.0kb upstream 2.0kb upstream 4368 true Chr05: 6594754-6599121 Phaseolus vulgaris
Phvul.005G051600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 6594754-6596753 Phaseolus vulgaris
Phvul.005G051600 2.0kb downstream 2.0kb downstream 4368 true Chr05: 6596754-6601121 Phaseolus vulgaris
Phvul.005G051600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 6599122-6601121 Phaseolus vulgaris
Phvul.005G051600 5.0kb upstream 5.0kb upstream 7368 true Chr05: 6591754-6599121 Phaseolus vulgaris
Phvul.005G051600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 6591754-6596753 Phaseolus vulgaris
Phvul.005G051600 5.0kb downstream 5.0kb downstream 7368 true Chr05: 6596754-6604121 Phaseolus vulgaris
Phvul.005G051600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 6599122-6604121 Phaseolus vulgaris
Phvul.005G051600 10.0kb upstream 10.0kb upstream 12368 true Chr05: 6586754-6599121 Phaseolus vulgaris
Phvul.005G051600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 6586754-6596753 Phaseolus vulgaris
Phvul.005G051600 10.0kb downstream 10.0kb downstream 12368 true Chr05: 6596754-6609121 Phaseolus vulgaris
Phvul.005G051600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 6599122-6609121 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310479 5265 Fabidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.0117 0.0 98.7915 High  
cufflinks 44.7646 0.0 120.863 High High
cufflinks 1.51757 0.0 4.77104   Low
cufflinks 11.7199 0.0 30.3788    
cufflinks 6.83341 0.0 18.2392    
cufflinks 1.83019 0.0 5.6014   Low
cufflinks 12.5998 0.0 32.6228    
cufflinks 7.65809 0.0 20.3534    
cufflinks 8.30353 0.0 21.8457    
cufflinks 64.5453 0.0 180.746 High High
cufflinks 17.6913 0.0 45.7481    

0 Strain