Gene : Phvul.005G054600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23115:SF138 - TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC Genomic Order:  541
Name:  ? Phvul.005G054600 Secondary Identifier:  ? PAC:37154471
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G054600 0.5kb upstream 0.5kb upstream 9148 true Chr05: 7156446-7165593 Phaseolus vulgaris
Phvul.005G054600 0.5kb upstream 0.5kb upstream 500 false Chr05: 7165094-7165593 Phaseolus vulgaris
Phvul.005G054600 0.5kb downstream 0.5kb downstream 9148 true Chr05: 7155946-7165093 Phaseolus vulgaris
Phvul.005G054600 0.5kb downstream 0.5kb downstream 500 false Chr05: 7155946-7156445 Phaseolus vulgaris
Phvul.005G054600 1.0kb upstream 1.0kb upstream 9648 true Chr05: 7156446-7166093 Phaseolus vulgaris
Phvul.005G054600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 7165094-7166093 Phaseolus vulgaris
Phvul.005G054600 1.0kb downstream 1.0kb downstream 9648 true Chr05: 7155446-7165093 Phaseolus vulgaris
Phvul.005G054600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 7155446-7156445 Phaseolus vulgaris
Phvul.005G054600 2.0kb upstream 2.0kb upstream 10648 true Chr05: 7156446-7167093 Phaseolus vulgaris
Phvul.005G054600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 7165094-7167093 Phaseolus vulgaris
Phvul.005G054600 2.0kb downstream 2.0kb downstream 10648 true Chr05: 7154446-7165093 Phaseolus vulgaris
Phvul.005G054600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 7154446-7156445 Phaseolus vulgaris
Phvul.005G054600 5.0kb upstream 5.0kb upstream 13648 true Chr05: 7156446-7170093 Phaseolus vulgaris
Phvul.005G054600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 7165094-7170093 Phaseolus vulgaris
Phvul.005G054600 5.0kb downstream 5.0kb downstream 13648 true Chr05: 7151446-7165093 Phaseolus vulgaris
Phvul.005G054600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 7151446-7156445 Phaseolus vulgaris
Phvul.005G054600 10.0kb upstream 10.0kb upstream 18648 true Chr05: 7156446-7175093 Phaseolus vulgaris
Phvul.005G054600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 7165094-7175093 Phaseolus vulgaris
Phvul.005G054600 10.0kb downstream 10.0kb downstream 18648 true Chr05: 7146446-7165093 Phaseolus vulgaris
Phvul.005G054600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 7146446-7156445 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306943 5265 Fabidae View MSA
124065303 5270 Rosid View MSA
123736618 5271 Pentapetalae View MSA
122788902 5272 Eudicot View MSA
122051139 5273 Angiosperm View MSA
121347361 5274 Embryophyte View MSA
123428388 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0012 0.0 31.1056    
cufflinks 18.5589 0.0 48.9856    
cufflinks 230.834 0.0 922.937 High High
cufflinks 8.83694 0.0 22.8774    
cufflinks 18.4685 0.0 48.5425    
cufflinks 145.077 0.0 513.88 High High
cufflinks 8.0256 0.0 20.7643    
cufflinks 8.08335 0.0 20.9058    
cufflinks 6.23935 0.0 16.2621   Low
cufflinks 35.4044 0.0 98.7074    
cufflinks 16.2284 0.0 42.4323    

0 Strain