Gene : Phvul.005G055200 P. vulgaris v2.1
Defline:  (1 of 1) K03541 - photosystem II 10kDa protein (psbR) Genomic Order:  547
Name:  ? Phvul.005G055200 Secondary Identifier:  ? PAC:37152634
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G055200 0.5kb upstream 0.5kb upstream 2351 true Chr05: 7254801-7257151 Phaseolus vulgaris
Phvul.005G055200 0.5kb upstream 0.5kb upstream 500 false Chr05: 7254801-7255300 Phaseolus vulgaris
Phvul.005G055200 0.5kb downstream 0.5kb downstream 2351 true Chr05: 7255301-7257651 Phaseolus vulgaris
Phvul.005G055200 0.5kb downstream 0.5kb downstream 500 false Chr05: 7257152-7257651 Phaseolus vulgaris
Phvul.005G055200 1.0kb upstream 1.0kb upstream 2851 true Chr05: 7254301-7257151 Phaseolus vulgaris
Phvul.005G055200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 7254301-7255300 Phaseolus vulgaris
Phvul.005G055200 1.0kb downstream 1.0kb downstream 2851 true Chr05: 7255301-7258151 Phaseolus vulgaris
Phvul.005G055200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 7257152-7258151 Phaseolus vulgaris
Phvul.005G055200 2.0kb upstream 2.0kb upstream 3851 true Chr05: 7253301-7257151 Phaseolus vulgaris
Phvul.005G055200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 7253301-7255300 Phaseolus vulgaris
Phvul.005G055200 2.0kb downstream 2.0kb downstream 3851 true Chr05: 7255301-7259151 Phaseolus vulgaris
Phvul.005G055200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 7257152-7259151 Phaseolus vulgaris
Phvul.005G055200 5.0kb upstream 5.0kb upstream 6851 true Chr05: 7250301-7257151 Phaseolus vulgaris
Phvul.005G055200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 7250301-7255300 Phaseolus vulgaris
Phvul.005G055200 5.0kb downstream 5.0kb downstream 6851 true Chr05: 7255301-7262151 Phaseolus vulgaris
Phvul.005G055200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 7257152-7262151 Phaseolus vulgaris
Phvul.005G055200 10.0kb upstream 10.0kb upstream 11851 true Chr05: 7245301-7257151 Phaseolus vulgaris
Phvul.005G055200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 7245301-7255300 Phaseolus vulgaris
Phvul.005G055200 10.0kb downstream 10.0kb downstream 11851 true Chr05: 7255301-7267151 Phaseolus vulgaris
Phvul.005G055200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 7257152-7267151 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301375 5265 Fabidae View MSA
124063437 5270 Rosid View MSA
123736551 5271 Pentapetalae View MSA
122791395 5272 Eudicot View MSA
122042523 5273 Angiosperm View MSA
121350947 5274 Embryophyte View MSA
123427183 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 565.664 0.0 1807.56 High  
cufflinks 618.9 0.0 2007.64 High  
cufflinks 4608.49 0.0 25299.1 High High
cufflinks 468.08 0.0 1435.26 High  
cufflinks 707.286 0.0 2341.43 High  
cufflinks 1172.81 0.0 4401.08 High  
cufflinks 2.33183 0.0 8.0179   Low
cufflinks 0.679146 0.0 2.61049   Low
cufflinks 6.86009 0.0 20.8833   Low
cufflinks 579.96 0.0 1849.39 High  
cufflinks 452.112 0.0 1381.42 High  

0 Strain