Gene : Phvul.005G048800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR32227:SF73 - CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN Genomic Order:  485
Name:  ? Phvul.005G048800 Secondary Identifier:  ? PAC:37154592
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G048800 0.5kb upstream 0.5kb upstream 2659 true Chr05: 5667571-5670229 Phaseolus vulgaris
Phvul.005G048800 0.5kb upstream 0.5kb upstream 500 false Chr05: 5669730-5670229 Phaseolus vulgaris
Phvul.005G048800 0.5kb downstream 0.5kb downstream 2659 true Chr05: 5667071-5669729 Phaseolus vulgaris
Phvul.005G048800 0.5kb downstream 0.5kb downstream 500 false Chr05: 5667071-5667570 Phaseolus vulgaris
Phvul.005G048800 1.0kb upstream 1.0kb upstream 3159 true Chr05: 5667571-5670729 Phaseolus vulgaris
Phvul.005G048800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5669730-5670729 Phaseolus vulgaris
Phvul.005G048800 1.0kb downstream 1.0kb downstream 3159 true Chr05: 5666571-5669729 Phaseolus vulgaris
Phvul.005G048800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5666571-5667570 Phaseolus vulgaris
Phvul.005G048800 2.0kb upstream 2.0kb upstream 4159 true Chr05: 5667571-5671729 Phaseolus vulgaris
Phvul.005G048800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5669730-5671729 Phaseolus vulgaris
Phvul.005G048800 2.0kb downstream 2.0kb downstream 4159 true Chr05: 5665571-5669729 Phaseolus vulgaris
Phvul.005G048800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5665571-5667570 Phaseolus vulgaris
Phvul.005G048800 5.0kb upstream 5.0kb upstream 7159 true Chr05: 5667571-5674729 Phaseolus vulgaris
Phvul.005G048800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5669730-5674729 Phaseolus vulgaris
Phvul.005G048800 5.0kb downstream 5.0kb downstream 7159 true Chr05: 5662571-5669729 Phaseolus vulgaris
Phvul.005G048800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5662571-5667570 Phaseolus vulgaris
Phvul.005G048800 10.0kb upstream 10.0kb upstream 12159 true Chr05: 5667571-5679729 Phaseolus vulgaris
Phvul.005G048800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5669730-5679729 Phaseolus vulgaris
Phvul.005G048800 10.0kb downstream 10.0kb downstream 12159 true Chr05: 5657571-5669729 Phaseolus vulgaris
Phvul.005G048800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5657571-5667570 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300076 5265 Fabidae View MSA
124062139 5270 Rosid View MSA
123753343 5271 Pentapetalae View MSA
122794093 5272 Eudicot View MSA
122050272 5273 Angiosperm View MSA
123429175 5275 Viridiplantae View MSA
121349342 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.612353 0.0 2.2586    
cufflinks 0.872935 0.0 3.116    
cufflinks 1.44256 0.0 4.84405    
cufflinks 1.10867 0.0 3.8151    
cufflinks 2.86118 0.0 8.86913    
cufflinks 1.53797 0.0 5.1452    
cufflinks 2.39733 0.0 7.57745    
cufflinks 0.840609 0.0 2.98876    
cufflinks 4.78386 0.0 13.9924   High
cufflinks 0.0870497 0.0 0.377783 Low Low
cufflinks 1.72121 0.0 5.70104    

0 Strain