Gene : Phvul.010G036400 P. vulgaris v2.1
Defline:  (1 of 1) K06442 - 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] (tlyA) Genomic Order:  356
Name:  ? Phvul.010G036400 Secondary Identifier:  ? PAC:37143967
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G036400 0.5kb upstream 0.5kb upstream 6423 true Chr10: 5369009-5375431 Phaseolus vulgaris
Phvul.010G036400 0.5kb upstream 0.5kb upstream 500 false Chr10: 5374932-5375431 Phaseolus vulgaris
Phvul.010G036400 0.5kb downstream 0.5kb downstream 6423 true Chr10: 5368509-5374931 Phaseolus vulgaris
Phvul.010G036400 0.5kb downstream 0.5kb downstream 500 false Chr10: 5368509-5369008 Phaseolus vulgaris
Phvul.010G036400 1.0kb upstream 1.0kb upstream 6923 true Chr10: 5369009-5375931 Phaseolus vulgaris
Phvul.010G036400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5374932-5375931 Phaseolus vulgaris
Phvul.010G036400 1.0kb downstream 1.0kb downstream 6923 true Chr10: 5368009-5374931 Phaseolus vulgaris
Phvul.010G036400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5368009-5369008 Phaseolus vulgaris
Phvul.010G036400 2.0kb upstream 2.0kb upstream 7923 true Chr10: 5369009-5376931 Phaseolus vulgaris
Phvul.010G036400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5374932-5376931 Phaseolus vulgaris
Phvul.010G036400 2.0kb downstream 2.0kb downstream 7923 true Chr10: 5367009-5374931 Phaseolus vulgaris
Phvul.010G036400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5367009-5369008 Phaseolus vulgaris
Phvul.010G036400 5.0kb upstream 5.0kb upstream 10923 true Chr10: 5369009-5379931 Phaseolus vulgaris
Phvul.010G036400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5374932-5379931 Phaseolus vulgaris
Phvul.010G036400 5.0kb downstream 5.0kb downstream 10923 true Chr10: 5364009-5374931 Phaseolus vulgaris
Phvul.010G036400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5364009-5369008 Phaseolus vulgaris
Phvul.010G036400 10.0kb upstream 10.0kb upstream 15923 true Chr10: 5369009-5384931 Phaseolus vulgaris
Phvul.010G036400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5374932-5384931 Phaseolus vulgaris
Phvul.010G036400 10.0kb downstream 10.0kb downstream 15923 true Chr10: 5359009-5374931 Phaseolus vulgaris
Phvul.010G036400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5359009-5369008 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301181 5265 Fabidae View MSA
124068570 5270 Rosid View MSA
123739916 5271 Pentapetalae View MSA
122785847 5272 Eudicot View MSA
122047844 5273 Angiosperm View MSA
121347499 5274 Embryophyte View MSA
123424173 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.62505 0.0 5.51575    
cufflinks 3.14834 0.0 9.93793    
cufflinks 5.78031 0.0 16.9725   High
cufflinks 2.36569 0.0 7.80561    
cufflinks 1.58537 0.0 5.47778    
cufflinks 4.30553 0.0 13.0874   High
cufflinks 2.23601 0.0 7.33048    
cufflinks 2.55873 0.0 8.20034    
cufflinks 1.56981 0.0 5.3779    
cufflinks 2.92231 0.0 9.34064    
cufflinks 1.43243 0.0 4.97719   Low

0 Strain