Gene : Phvul.010G023900 P. vulgaris v2.1
Defline:  (1 of 6) K17686 - Cu+-exporting ATPase (copA, ATP7) Genomic Order:  231
Name:  ? Phvul.010G023900 Secondary Identifier:  ? PAC:37143301
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G023900 0.5kb upstream 0.5kb upstream 8519 true Chr10: 3363187-3371705 Phaseolus vulgaris
Phvul.010G023900 0.5kb upstream 0.5kb upstream 500 false Chr10: 3371206-3371705 Phaseolus vulgaris
Phvul.010G023900 0.5kb downstream 0.5kb downstream 8519 true Chr10: 3362687-3371205 Phaseolus vulgaris
Phvul.010G023900 0.5kb downstream 0.5kb downstream 500 false Chr10: 3362687-3363186 Phaseolus vulgaris
Phvul.010G023900 1.0kb upstream 1.0kb upstream 9019 true Chr10: 3363187-3372205 Phaseolus vulgaris
Phvul.010G023900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3371206-3372205 Phaseolus vulgaris
Phvul.010G023900 1.0kb downstream 1.0kb downstream 9019 true Chr10: 3362187-3371205 Phaseolus vulgaris
Phvul.010G023900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3362187-3363186 Phaseolus vulgaris
Phvul.010G023900 2.0kb upstream 2.0kb upstream 10019 true Chr10: 3363187-3373205 Phaseolus vulgaris
Phvul.010G023900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3371206-3373205 Phaseolus vulgaris
Phvul.010G023900 2.0kb downstream 2.0kb downstream 10019 true Chr10: 3361187-3371205 Phaseolus vulgaris
Phvul.010G023900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3361187-3363186 Phaseolus vulgaris
Phvul.010G023900 5.0kb upstream 5.0kb upstream 13019 true Chr10: 3363187-3376205 Phaseolus vulgaris
Phvul.010G023900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3371206-3376205 Phaseolus vulgaris
Phvul.010G023900 5.0kb downstream 5.0kb downstream 13019 true Chr10: 3358187-3371205 Phaseolus vulgaris
Phvul.010G023900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3358187-3363186 Phaseolus vulgaris
Phvul.010G023900 10.0kb upstream 10.0kb upstream 18019 true Chr10: 3363187-3381205 Phaseolus vulgaris
Phvul.010G023900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3371206-3381205 Phaseolus vulgaris
Phvul.010G023900 10.0kb downstream 10.0kb downstream 18019 true Chr10: 3353187-3371205 Phaseolus vulgaris
Phvul.010G023900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3353187-3363186 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305336 5265 Fabidae View MSA
124069663 5270 Rosid View MSA
123747003 5271 Pentapetalae View MSA
122794490 5272 Eudicot View MSA
122042760 5273 Angiosperm View MSA
121351146 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.7951 0.0 20.2546   High
cufflinks 1.8841 0.0 7.18216    
cufflinks 3.31057 0.0 12.5934    
cufflinks 1.8346 0.0 5.76448    
cufflinks 2.40948 0.0 8.46306    
cufflinks 2.48519 0.0 8.71749    
cufflinks 2.42623 0.0 8.59767    
cufflinks 1.33562 0.0 5.5369   Low
cufflinks 2.91277 0.0 9.82098    
cufflinks 1.74853 0.0 6.56541    
cufflinks 1.41536 0.0 5.91631   Low

0 Strain