Gene : Phvul.005G172000 P. vulgaris v2.1
Defline:  (1 of 3) K17302 - coatomer, subunit beta' (COPB2, SEC27) Genomic Order:  1612
Name:  ? Phvul.005G172000 Secondary Identifier:  ? PAC:37153272
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G172000 0.5kb upstream 0.5kb upstream 11187 true Chr05: 39766776-39777962 Phaseolus vulgaris
Phvul.005G172000 0.5kb upstream 0.5kb upstream 500 false Chr05: 39766776-39767275 Phaseolus vulgaris
Phvul.005G172000 0.5kb downstream 0.5kb downstream 11187 true Chr05: 39767276-39778462 Phaseolus vulgaris
Phvul.005G172000 0.5kb downstream 0.5kb downstream 500 false Chr05: 39777963-39778462 Phaseolus vulgaris
Phvul.005G172000 1.0kb upstream 1.0kb upstream 11687 true Chr05: 39766276-39777962 Phaseolus vulgaris
Phvul.005G172000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 39766276-39767275 Phaseolus vulgaris
Phvul.005G172000 1.0kb downstream 1.0kb downstream 11687 true Chr05: 39767276-39778962 Phaseolus vulgaris
Phvul.005G172000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 39777963-39778962 Phaseolus vulgaris
Phvul.005G172000 2.0kb upstream 2.0kb upstream 12687 true Chr05: 39765276-39777962 Phaseolus vulgaris
Phvul.005G172000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 39765276-39767275 Phaseolus vulgaris
Phvul.005G172000 2.0kb downstream 2.0kb downstream 12687 true Chr05: 39767276-39779962 Phaseolus vulgaris
Phvul.005G172000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 39777963-39779962 Phaseolus vulgaris
Phvul.005G172000 5.0kb upstream 5.0kb upstream 15687 true Chr05: 39762276-39777962 Phaseolus vulgaris
Phvul.005G172000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 39762276-39767275 Phaseolus vulgaris
Phvul.005G172000 5.0kb downstream 5.0kb downstream 15687 true Chr05: 39767276-39782962 Phaseolus vulgaris
Phvul.005G172000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 39777963-39782962 Phaseolus vulgaris
Phvul.005G172000 10.0kb upstream 10.0kb upstream 20687 true Chr05: 39757276-39777962 Phaseolus vulgaris
Phvul.005G172000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 39757276-39767275 Phaseolus vulgaris
Phvul.005G172000 10.0kb downstream 10.0kb downstream 20687 true Chr05: 39767276-39787962 Phaseolus vulgaris
Phvul.005G172000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 39777963-39787962 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314156 5265 Fabidae View MSA
124066819 5270 Rosid View MSA
123745194 5271 Pentapetalae View MSA
122792729 5272 Eudicot View MSA
122046089 5273 Angiosperm View MSA
121350905 5274 Embryophyte View MSA
123424044 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.85138 0.0 25.5377   Low
cufflinks 28.0879 0.0 74.716    
cufflinks 27.2112 0.0 72.3258    
cufflinks 27.7307 0.0 73.2376    
cufflinks 32.4519 0.0 86.8658    
cufflinks 37.4278 0.0 102.044 High  
cufflinks 38.8928 0.0 106.23 High  
cufflinks 35.7421 0.0 97.2824 High  
cufflinks 44.0713 0.0 121.674 High  
cufflinks 21.4457 0.0 56.0706    
cufflinks 43.5081 0.0 119.651 High  

0 Strain