Gene : Phvul.005G161400 P. vulgaris v2.1
Defline:  (1 of 1) K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2) Genomic Order:  1510
Name:  ? Phvul.005G161400 Secondary Identifier:  ? PAC:37154275
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G161400 0.5kb upstream 0.5kb upstream 2182 true Chr05: 38949370-38951551 Phaseolus vulgaris
Phvul.005G161400 0.5kb upstream 0.5kb upstream 500 false Chr05: 38949370-38949869 Phaseolus vulgaris
Phvul.005G161400 0.5kb downstream 0.5kb downstream 2182 true Chr05: 38949870-38952051 Phaseolus vulgaris
Phvul.005G161400 0.5kb downstream 0.5kb downstream 500 false Chr05: 38951552-38952051 Phaseolus vulgaris
Phvul.005G161400 1.0kb upstream 1.0kb upstream 2682 true Chr05: 38948870-38951551 Phaseolus vulgaris
Phvul.005G161400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38948870-38949869 Phaseolus vulgaris
Phvul.005G161400 1.0kb downstream 1.0kb downstream 2682 true Chr05: 38949870-38952551 Phaseolus vulgaris
Phvul.005G161400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38951552-38952551 Phaseolus vulgaris
Phvul.005G161400 2.0kb upstream 2.0kb upstream 3682 true Chr05: 38947870-38951551 Phaseolus vulgaris
Phvul.005G161400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38947870-38949869 Phaseolus vulgaris
Phvul.005G161400 2.0kb downstream 2.0kb downstream 3682 true Chr05: 38949870-38953551 Phaseolus vulgaris
Phvul.005G161400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38951552-38953551 Phaseolus vulgaris
Phvul.005G161400 5.0kb upstream 5.0kb upstream 6682 true Chr05: 38944870-38951551 Phaseolus vulgaris
Phvul.005G161400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38944870-38949869 Phaseolus vulgaris
Phvul.005G161400 5.0kb downstream 5.0kb downstream 6682 true Chr05: 38949870-38956551 Phaseolus vulgaris
Phvul.005G161400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38951552-38956551 Phaseolus vulgaris
Phvul.005G161400 10.0kb upstream 10.0kb upstream 11682 true Chr05: 38939870-38951551 Phaseolus vulgaris
Phvul.005G161400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38939870-38949869 Phaseolus vulgaris
Phvul.005G161400 10.0kb downstream 10.0kb downstream 11682 true Chr05: 38949870-38961551 Phaseolus vulgaris
Phvul.005G161400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38951552-38961551 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313767 5265 Fabidae View MSA
124063895 5270 Rosid View MSA
123748216 5271 Pentapetalae View MSA
122794716 5272 Eudicot View MSA
122044262 5273 Angiosperm View MSA
121349635 5274 Embryophyte View MSA
123427092 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 129.926 0.0 374.392 High High
cufflinks 94.9596 0.0 263.456 High  
cufflinks 51.7326 0.0 135.782 High Low
cufflinks 113.546 0.0 322.033 High  
cufflinks 104.418 0.0 293.022 High  
cufflinks 60.3962 0.0 160.652 High Low
cufflinks 77.2348 0.0 211.112 High  
cufflinks 59.3884 0.0 158.024 High Low
cufflinks 85.9025 0.0 237.062 High  
cufflinks 72.0255 0.0 194.986 High  
cufflinks 127.909 0.0 369.271 High High

0 Strain