Gene : Phvul.010G017600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10357//PTHR10357:SF153 - ALPHA-AMYLASE // SUBFAMILY NOT NAMED Genomic Order:  166
Name:  ? Phvul.010G017600 Secondary Identifier:  ? PAC:37143468
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.010G017600 0.5kb upstream 0.5kb upstream 3055 true Chr10: 2603576-2606630 Phaseolus vulgaris
Phvul.010G017600 0.5kb upstream 0.5kb upstream 500 false Chr10: 2603576-2604075 Phaseolus vulgaris
Phvul.010G017600 0.5kb downstream 0.5kb downstream 3055 true Chr10: 2604076-2607130 Phaseolus vulgaris
Phvul.010G017600 0.5kb downstream 0.5kb downstream 500 false Chr10: 2606631-2607130 Phaseolus vulgaris
Phvul.010G017600 1.0kb upstream 1.0kb upstream 3555 true Chr10: 2603076-2606630 Phaseolus vulgaris
Phvul.010G017600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 2603076-2604075 Phaseolus vulgaris
Phvul.010G017600 1.0kb downstream 1.0kb downstream 3555 true Chr10: 2604076-2607630 Phaseolus vulgaris
Phvul.010G017600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 2606631-2607630 Phaseolus vulgaris
Phvul.010G017600 2.0kb upstream 2.0kb upstream 4555 true Chr10: 2602076-2606630 Phaseolus vulgaris
Phvul.010G017600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 2602076-2604075 Phaseolus vulgaris
Phvul.010G017600 2.0kb downstream 2.0kb downstream 4555 true Chr10: 2604076-2608630 Phaseolus vulgaris
Phvul.010G017600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 2606631-2608630 Phaseolus vulgaris
Phvul.010G017600 5.0kb upstream 5.0kb upstream 7555 true Chr10: 2599076-2606630 Phaseolus vulgaris
Phvul.010G017600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 2599076-2604075 Phaseolus vulgaris
Phvul.010G017600 5.0kb downstream 5.0kb downstream 7555 true Chr10: 2604076-2611630 Phaseolus vulgaris
Phvul.010G017600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 2606631-2611630 Phaseolus vulgaris
Phvul.010G017600 10.0kb upstream 10.0kb upstream 12555 true Chr10: 2594076-2606630 Phaseolus vulgaris
Phvul.010G017600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 2594076-2604075 Phaseolus vulgaris
Phvul.010G017600 10.0kb downstream 10.0kb downstream 12555 true Chr10: 2604076-2616630 Phaseolus vulgaris
Phvul.010G017600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 2606631-2616630 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301311 5265 Fabidae View MSA
124065639 5270 Rosid View MSA
123738946 5271 Pentapetalae View MSA
122797771 5272 Eudicot View MSA
122048230 5273 Angiosperm View MSA
121344557 5274 Embryophyte View MSA
123427521 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 67.3128 0.0 181.288 High High
cufflinks 27.4609 0.0 70.9871    
cufflinks 0.325881 0.0 1.2428 Low Low
cufflinks 15.564 0.0 40.8695    
cufflinks 13.6495 0.0 36.1699    
cufflinks 3.09191 0.0 9.36335    
cufflinks 6.36736 0.0 17.8434    
cufflinks 4.71698 0.0 13.6046    
cufflinks 12.0242 0.0 31.9654    
cufflinks 55.307 0.0 146.493 High High
cufflinks 5.87532 0.0 16.6807    

0 Strain