Gene : Phvul.005G156000 P. vulgaris v2.1
Defline:  (1 of 1) PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Genomic Order:  1455
Name:  ? Phvul.005G156000 Secondary Identifier:  ? PAC:37154006
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G156000 0.5kb upstream 0.5kb upstream 8046 true Chr05: 38510922-38518967 Phaseolus vulgaris
Phvul.005G156000 0.5kb upstream 0.5kb upstream 500 false Chr05: 38510922-38511421 Phaseolus vulgaris
Phvul.005G156000 0.5kb downstream 0.5kb downstream 8046 true Chr05: 38511422-38519467 Phaseolus vulgaris
Phvul.005G156000 0.5kb downstream 0.5kb downstream 500 false Chr05: 38518968-38519467 Phaseolus vulgaris
Phvul.005G156000 1.0kb upstream 1.0kb upstream 8546 true Chr05: 38510422-38518967 Phaseolus vulgaris
Phvul.005G156000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 38510422-38511421 Phaseolus vulgaris
Phvul.005G156000 1.0kb downstream 1.0kb downstream 8546 true Chr05: 38511422-38519967 Phaseolus vulgaris
Phvul.005G156000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 38518968-38519967 Phaseolus vulgaris
Phvul.005G156000 2.0kb upstream 2.0kb upstream 9546 true Chr05: 38509422-38518967 Phaseolus vulgaris
Phvul.005G156000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 38509422-38511421 Phaseolus vulgaris
Phvul.005G156000 2.0kb downstream 2.0kb downstream 9546 true Chr05: 38511422-38520967 Phaseolus vulgaris
Phvul.005G156000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 38518968-38520967 Phaseolus vulgaris
Phvul.005G156000 5.0kb upstream 5.0kb upstream 12546 true Chr05: 38506422-38518967 Phaseolus vulgaris
Phvul.005G156000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 38506422-38511421 Phaseolus vulgaris
Phvul.005G156000 5.0kb downstream 5.0kb downstream 12546 true Chr05: 38511422-38523967 Phaseolus vulgaris
Phvul.005G156000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 38518968-38523967 Phaseolus vulgaris
Phvul.005G156000 10.0kb upstream 10.0kb upstream 17546 true Chr05: 38501422-38518967 Phaseolus vulgaris
Phvul.005G156000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 38501422-38511421 Phaseolus vulgaris
Phvul.005G156000 10.0kb downstream 10.0kb downstream 17546 true Chr05: 38511422-38528967 Phaseolus vulgaris
Phvul.005G156000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 38518968-38528967 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310988 5265 Fabidae View MSA
124063578 5270 Rosid View MSA
123743281 5271 Pentapetalae View MSA
122790252 5272 Eudicot View MSA
122049882 5273 Angiosperm View MSA
121348132 5274 Embryophyte View MSA
123427801 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9086 0.0 33.4205    
cufflinks 15.7226 0.0 40.6404    
cufflinks 13.0382 0.0 33.7619    
cufflinks 9.80595 0.0 25.6738   Low
cufflinks 14.9362 0.0 38.6391    
cufflinks 14.2074 0.0 36.7421    
cufflinks 16.4001 0.0 42.3975    
cufflinks 16.9591 0.0 43.8605    
cufflinks 16.5542 0.0 42.7945    
cufflinks 19.7382 0.0 51.1085   High
cufflinks 14.6353 0.0 37.8607    

0 Strain