Gene : Phvul.007G280400 P. vulgaris v2.1
Defline:  (1 of 12) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2665
Name:  ? Phvul.007G280400 Secondary Identifier:  ? PAC:37165034
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.007G280400 0.5kb upstream 0.5kb upstream 4932 true Chr07: 39977126-39982057 Phaseolus vulgaris
Phvul.007G280400 0.5kb upstream 0.5kb upstream 500 false Chr07: 39977126-39977625 Phaseolus vulgaris
Phvul.007G280400 0.5kb downstream 0.5kb downstream 4932 true Chr07: 39977626-39982557 Phaseolus vulgaris
Phvul.007G280400 0.5kb downstream 0.5kb downstream 500 false Chr07: 39982058-39982557 Phaseolus vulgaris
Phvul.007G280400 1.0kb upstream 1.0kb upstream 5432 true Chr07: 39976626-39982057 Phaseolus vulgaris
Phvul.007G280400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 39976626-39977625 Phaseolus vulgaris
Phvul.007G280400 1.0kb downstream 1.0kb downstream 5432 true Chr07: 39977626-39983057 Phaseolus vulgaris
Phvul.007G280400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 39982058-39983057 Phaseolus vulgaris
Phvul.007G280400 2.0kb upstream 2.0kb upstream 6432 true Chr07: 39975626-39982057 Phaseolus vulgaris
Phvul.007G280400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 39975626-39977625 Phaseolus vulgaris
Phvul.007G280400 2.0kb downstream 2.0kb downstream 6432 true Chr07: 39977626-39984057 Phaseolus vulgaris
Phvul.007G280400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 39982058-39984057 Phaseolus vulgaris
Phvul.007G280400 5.0kb upstream 5.0kb upstream 9432 true Chr07: 39972626-39982057 Phaseolus vulgaris
Phvul.007G280400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 39972626-39977625 Phaseolus vulgaris
Phvul.007G280400 5.0kb downstream 5.0kb downstream 9432 true Chr07: 39977626-39987057 Phaseolus vulgaris
Phvul.007G280400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 39982058-39987057 Phaseolus vulgaris
Phvul.007G280400 10.0kb upstream 10.0kb upstream 14432 true Chr07: 39967626-39982057 Phaseolus vulgaris
Phvul.007G280400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 39967626-39977625 Phaseolus vulgaris
Phvul.007G280400 10.0kb downstream 10.0kb downstream 14432 true Chr07: 39977626-39992057 Phaseolus vulgaris
Phvul.007G280400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 39982058-39992057 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311646 5265 Fabidae View MSA
124068490 5270 Rosid View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.9372 0.0 36.1651    
cufflinks 25.2538 0.0 65.5413   High
cufflinks 7.72212 0.0 20.6804   Low
cufflinks 12.7262 0.0 33.2389    
cufflinks 11.5544 0.0 30.3263    
cufflinks 8.23483 0.0 21.9481   Low
cufflinks 15.4858 0.0 40.0891    
cufflinks 19.6526 0.0 50.8159   High
cufflinks 18.3999 0.0 47.5621    
cufflinks 12.506 0.0 32.576    
cufflinks 14.7394 0.0 38.235    

0 Strain