Gene : Phvul.005G133500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR35116:SF2 - ATP-DEPENDENT HELICASE-LIKE PROTEIN Genomic Order:  1343
Name:  ? Phvul.005G133500 Secondary Identifier:  ? PAC:37152367
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G133500 0.5kb upstream 0.5kb upstream 18258 true Chr05: 37344788-37363045 Phaseolus vulgaris
Phvul.005G133500 0.5kb upstream 0.5kb upstream 500 false Chr05: 37344788-37345287 Phaseolus vulgaris
Phvul.005G133500 0.5kb downstream 0.5kb downstream 18258 true Chr05: 37345288-37363545 Phaseolus vulgaris
Phvul.005G133500 0.5kb downstream 0.5kb downstream 500 false Chr05: 37363046-37363545 Phaseolus vulgaris
Phvul.005G133500 1.0kb upstream 1.0kb upstream 18758 true Chr05: 37344288-37363045 Phaseolus vulgaris
Phvul.005G133500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37344288-37345287 Phaseolus vulgaris
Phvul.005G133500 1.0kb downstream 1.0kb downstream 18758 true Chr05: 37345288-37364045 Phaseolus vulgaris
Phvul.005G133500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37363046-37364045 Phaseolus vulgaris
Phvul.005G133500 2.0kb upstream 2.0kb upstream 19758 true Chr05: 37343288-37363045 Phaseolus vulgaris
Phvul.005G133500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37343288-37345287 Phaseolus vulgaris
Phvul.005G133500 2.0kb downstream 2.0kb downstream 19758 true Chr05: 37345288-37365045 Phaseolus vulgaris
Phvul.005G133500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37363046-37365045 Phaseolus vulgaris
Phvul.005G133500 5.0kb upstream 5.0kb upstream 22758 true Chr05: 37340288-37363045 Phaseolus vulgaris
Phvul.005G133500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37340288-37345287 Phaseolus vulgaris
Phvul.005G133500 5.0kb downstream 5.0kb downstream 22758 true Chr05: 37345288-37368045 Phaseolus vulgaris
Phvul.005G133500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37363046-37368045 Phaseolus vulgaris
Phvul.005G133500 10.0kb upstream 10.0kb upstream 27758 true Chr05: 37335288-37363045 Phaseolus vulgaris
Phvul.005G133500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37335288-37345287 Phaseolus vulgaris
Phvul.005G133500 10.0kb downstream 10.0kb downstream 27758 true Chr05: 37345288-37373045 Phaseolus vulgaris
Phvul.005G133500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37363046-37373045 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313941 5265 Fabidae View MSA
124069774 5270 Rosid View MSA
123750544 5271 Pentapetalae View MSA
122796032 5272 Eudicot View MSA
122043248 5273 Angiosperm View MSA
121351152 5274 Embryophyte View MSA
123382029 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.760605 0.0 2.48162   Low
cufflinks 2.74709 0.0 9.80694    
cufflinks 5.53578 0.0 15.586    
cufflinks 1.20391 0.0 4.43608   Low
cufflinks 2.83005 0.0 12.7291    
cufflinks 5.75496 0.0 18.5198    
cufflinks 4.74098 0.0 13.5624    
cufflinks 5.78618 0.0 18.5362    
cufflinks 4.22951 0.0 14.0078    
cufflinks 4.65683 0.0 13.3626    
cufflinks 2.18086 0.0 7.24457    

0 Strain