Gene : Phvul.005G119200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22849:SF0 - WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1197
Name:  ? Phvul.005G119200 Secondary Identifier:  ? PAC:37152397
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.005G119200 0.5kb upstream 0.5kb upstream 1890 true Chr05: 35452778-35454667 Phaseolus vulgaris
Phvul.005G119200 0.5kb upstream 0.5kb upstream 500 false Chr05: 35454168-35454667 Phaseolus vulgaris
Phvul.005G119200 0.5kb downstream 0.5kb downstream 1890 true Chr05: 35452278-35454167 Phaseolus vulgaris
Phvul.005G119200 0.5kb downstream 0.5kb downstream 500 false Chr05: 35452278-35452777 Phaseolus vulgaris
Phvul.005G119200 1.0kb upstream 1.0kb upstream 2390 true Chr05: 35452778-35455167 Phaseolus vulgaris
Phvul.005G119200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 35454168-35455167 Phaseolus vulgaris
Phvul.005G119200 1.0kb downstream 1.0kb downstream 2390 true Chr05: 35451778-35454167 Phaseolus vulgaris
Phvul.005G119200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 35451778-35452777 Phaseolus vulgaris
Phvul.005G119200 2.0kb upstream 2.0kb upstream 3390 true Chr05: 35452778-35456167 Phaseolus vulgaris
Phvul.005G119200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 35454168-35456167 Phaseolus vulgaris
Phvul.005G119200 2.0kb downstream 2.0kb downstream 3390 true Chr05: 35450778-35454167 Phaseolus vulgaris
Phvul.005G119200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 35450778-35452777 Phaseolus vulgaris
Phvul.005G119200 5.0kb upstream 5.0kb upstream 6390 true Chr05: 35452778-35459167 Phaseolus vulgaris
Phvul.005G119200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 35454168-35459167 Phaseolus vulgaris
Phvul.005G119200 5.0kb downstream 5.0kb downstream 6390 true Chr05: 35447778-35454167 Phaseolus vulgaris
Phvul.005G119200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 35447778-35452777 Phaseolus vulgaris
Phvul.005G119200 10.0kb upstream 10.0kb upstream 11390 true Chr05: 35452778-35464167 Phaseolus vulgaris
Phvul.005G119200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 35454168-35464167 Phaseolus vulgaris
Phvul.005G119200 10.0kb downstream 10.0kb downstream 11390 true Chr05: 35442778-35454167 Phaseolus vulgaris
Phvul.005G119200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 35442778-35452777 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310390 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.342701 0.0 1.32923 Low High
cufflinks 0.092466 0.0 0.40023 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0935064 0.0 0.405486 Low  
cufflinks 0.0845416 0.0 0.370281 Low  
cufflinks 0.0645154 0.0 0.289544 Low  
cufflinks 0.519032 0.0 1.94794 Low High
cufflinks 0.245511 0.0 0.978067 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0249901 0.0 0.123977 Low Low

0 Strain